Results 61 - 80 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 26792 | 0.67 | 0.746895 |
Target: 5'- -aCCGCGGagcACCUGGCGcGCCUgCGCCu- -3' miRNA: 3'- aaGGUGCU---UGGGUCGC-UGGA-GCGGcu -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 125844 | 0.67 | 0.746895 |
Target: 5'- -gCCGCGGGCCCccGGCcGCCgcggaCGCCGu -3' miRNA: 3'- aaGGUGCUUGGG--UCGcUGGa----GCGGCu -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 34555 | 0.67 | 0.746895 |
Target: 5'- -gCCGCG-ACCCGGCcGCCggggagcguugUCGCCGu -3' miRNA: 3'- aaGGUGCuUGGGUCGcUGG-----------AGCGGCu -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 22930 | 0.67 | 0.756379 |
Target: 5'- -cCCGCGGGCCCcGCuuCCcCGCCGc -3' miRNA: 3'- aaGGUGCUUGGGuCGcuGGaGCGGCu -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 49300 | 0.67 | 0.760143 |
Target: 5'- -cCCGCGAGCCCgacgacGGCGcgcgucggaagccccGCCcacaucccaUCGCCGAg -3' miRNA: 3'- aaGGUGCUUGGG------UCGC---------------UGG---------AGCGGCU- -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 100446 | 0.66 | 0.765756 |
Target: 5'- -aCCGgGGACaaGGCGACCccgCGCUGAc -3' miRNA: 3'- aaGGUgCUUGggUCGCUGGa--GCGGCU- -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 74363 | 0.66 | 0.765756 |
Target: 5'- -cCCGaGGACCUGGCGGCCUgGCUc- -3' miRNA: 3'- aaGGUgCUUGGGUCGCUGGAgCGGcu -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 64153 | 0.66 | 0.775019 |
Target: 5'- -gCCGCGcguGGCCCGGCaGGCCaaaaaGCCGGc -3' miRNA: 3'- aaGGUGC---UUGGGUCG-CUGGag---CGGCU- -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 21892 | 0.66 | 0.775019 |
Target: 5'- cUCCGCGGGCCgCAuCGAgCgcCGCCGGg -3' miRNA: 3'- aAGGUGCUUGG-GUcGCUgGa-GCGGCU- -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 138683 | 0.66 | 0.775019 |
Target: 5'- -gCCugGAugcgACCCAGagGACCcUCGCCu- -3' miRNA: 3'- aaGGugCU----UGGGUCg-CUGG-AGCGGcu -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 1604 | 0.66 | 0.775019 |
Target: 5'- --aCACGGGCCgCAGCGGCg-CGCCc- -3' miRNA: 3'- aagGUGCUUGG-GUCGCUGgaGCGGcu -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 91520 | 0.66 | 0.784157 |
Target: 5'- -aCCugGAGCgCuGCGACggCGCCGu -3' miRNA: 3'- aaGGugCUUGgGuCGCUGgaGCGGCu -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 84194 | 0.66 | 0.784157 |
Target: 5'- -aCC-CGAuGCCCAGCccGACCUCGaCCu- -3' miRNA: 3'- aaGGuGCU-UGGGUCG--CUGGAGC-GGcu -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 78592 | 0.66 | 0.784157 |
Target: 5'- -cCCACGGG-CCAGC-ACgUCGCCGu -3' miRNA: 3'- aaGGUGCUUgGGUCGcUGgAGCGGCu -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 139737 | 0.66 | 0.784157 |
Target: 5'- -gCCACG---CCAG-GGCCUCGCUGAc -3' miRNA: 3'- aaGGUGCuugGGUCgCUGGAGCGGCU- -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 84962 | 0.66 | 0.784157 |
Target: 5'- --aCACGAGCgCCAGCGcuaucgggGCCuuuUCGCCGc -3' miRNA: 3'- aagGUGCUUG-GGUCGC--------UGG---AGCGGCu -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 150817 | 0.66 | 0.790475 |
Target: 5'- cUCCGCGGaagACCCAgGCcGCCUCGgguguaacguuagaCCGAg -3' miRNA: 3'- aAGGUGCU---UGGGU-CGcUGGAGC--------------GGCU- -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 3473 | 0.66 | 0.793162 |
Target: 5'- -gCCugGGcgcggcGCCCGGCGuCgUCGUCGGc -3' miRNA: 3'- aaGGugCU------UGGGUCGCuGgAGCGGCU- -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 87658 | 0.66 | 0.793162 |
Target: 5'- gUUgCGCGGGCCCGGCGGCgUaguaGgCGGg -3' miRNA: 3'- -AAgGUGCUUGGGUCGCUGgAg---CgGCU- -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 135810 | 0.66 | 0.793162 |
Target: 5'- -cCCGCaGACCC-GCGGcuguuuccgcCCUUGCCGAa -3' miRNA: 3'- aaGGUGcUUGGGuCGCU----------GGAGCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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