miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5575 5' -58.7 NC_001806.1 + 56624 0.7 0.56776
Target:  5'- -gCCGCGcGACCCuggccgguGCGACCUCaucgGCCGGc -3'
miRNA:   3'- aaGGUGC-UUGGGu-------CGCUGGAG----CGGCU- -5'
5575 5' -58.7 NC_001806.1 + 64153 0.66 0.775019
Target:  5'- -gCCGCGcguGGCCCGGCaGGCCaaaaaGCCGGc -3'
miRNA:   3'- aaGGUGC---UUGGGUCG-CUGGag---CGGCU- -5'
5575 5' -58.7 NC_001806.1 + 65564 0.66 0.802026
Target:  5'- --aCGCGGACCCgGGCG-UCUUGUCGGa -3'
miRNA:   3'- aagGUGCUUGGG-UCGCuGGAGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 66853 0.69 0.638045
Target:  5'- cUCCugGGGCCCgggcacacggcGGUGACgCUCGCUa- -3'
miRNA:   3'- aAGGugCUUGGG-----------UCGCUG-GAGCGGcu -5'
5575 5' -58.7 NC_001806.1 + 68196 0.72 0.426476
Target:  5'- aUUgGCGAGCCUAGcCGGCCuUCGCCa- -3'
miRNA:   3'- aAGgUGCUUGGGUC-GCUGG-AGCGGcu -5'
5575 5' -58.7 NC_001806.1 + 70145 0.66 0.809877
Target:  5'- cUCCuCGAaccggccGCCCggGGCGGCCUCgGCCc- -3'
miRNA:   3'- aAGGuGCU-------UGGG--UCGCUGGAG-CGGcu -5'
5575 5' -58.7 NC_001806.1 + 70332 0.68 0.648126
Target:  5'- -cCCugGccGCCCGGgGggugcugcaggACCUCGCCGAg -3'
miRNA:   3'- aaGGugCu-UGGGUCgC-----------UGGAGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 71956 0.66 0.808143
Target:  5'- -aCCGCGGGCCCugGGCcGCCgcgcauguguucgaUCGUCGAg -3'
miRNA:   3'- aaGGUGCUUGGG--UCGcUGG--------------AGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 73208 0.68 0.668244
Target:  5'- -gCC-CGAGCCCccgGGCgcaGACCUCGCCc- -3'
miRNA:   3'- aaGGuGCUUGGG---UCG---CUGGAGCGGcu -5'
5575 5' -58.7 NC_001806.1 + 73698 0.67 0.731521
Target:  5'- -cUCGCGGACCUGgagcugcagcuucgcGCGGCCcCGCCGGc -3'
miRNA:   3'- aaGGUGCUUGGGU---------------CGCUGGaGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 74363 0.66 0.765756
Target:  5'- -cCCGaGGACCUGGCGGCCUgGCUc- -3'
miRNA:   3'- aaGGUgCUUGGGUCGCUGGAgCGGcu -5'
5575 5' -58.7 NC_001806.1 + 74869 0.69 0.607804
Target:  5'- gUCCugGcGACCCuGCgGGCCUCccuGCCGGc -3'
miRNA:   3'- aAGGugC-UUGGGuCG-CUGGAG---CGGCU- -5'
5575 5' -58.7 NC_001806.1 + 75296 0.68 0.688248
Target:  5'- -cCCugGccuuCCUAGCGGCCaUgGCCGAc -3'
miRNA:   3'- aaGGugCuu--GGGUCGCUGG-AgCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 76218 0.69 0.59775
Target:  5'- aUCCGCGAucGCCUGGaCGcCCUCcggGCCGAc -3'
miRNA:   3'- aAGGUGCU--UGGGUC-GCuGGAG---CGGCU- -5'
5575 5' -58.7 NC_001806.1 + 76307 0.75 0.294491
Target:  5'- aUCCGCGGugcgcaacgACCCGGCGGCggcCGCCGAg -3'
miRNA:   3'- aAGGUGCU---------UGGGUCGCUGga-GCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 77059 0.69 0.607804
Target:  5'- -gCUGCGAGCCCAGCGggacuacgagcGCCUuccCGCCa- -3'
miRNA:   3'- aaGGUGCUUGGGUCGC-----------UGGA---GCGGcu -5'
5575 5' -58.7 NC_001806.1 + 77388 0.68 0.688248
Target:  5'- --gCGCGGGCgCGGCGGCCgCGCCc- -3'
miRNA:   3'- aagGUGCUUGgGUCGCUGGaGCGGcu -5'
5575 5' -58.7 NC_001806.1 + 78592 0.66 0.784157
Target:  5'- -cCCACGGG-CCAGC-ACgUCGCCGu -3'
miRNA:   3'- aaGGUGCUUgGGUCGcUGgAGCGGCu -5'
5575 5' -58.7 NC_001806.1 + 78908 0.68 0.658195
Target:  5'- gUCCGCGcucaucGCCgAGCGGCCccUCGCCc- -3'
miRNA:   3'- aAGGUGCu-----UGGgUCGCUGG--AGCGGcu -5'
5575 5' -58.7 NC_001806.1 + 79729 0.67 0.746895
Target:  5'- cUUCCGCGAccACCCaggguuGGCGGCCgccUGCCc- -3'
miRNA:   3'- -AAGGUGCU--UGGG------UCGCUGGa--GCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.