miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5575 5' -58.7 NC_001806.1 + 112255 0.72 0.435271
Target:  5'- -aCCAgGGugGCCCgGGCGACCcuggUCGCCGAg -3'
miRNA:   3'- aaGGUgCU--UGGG-UCGCUGG----AGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 108524 0.7 0.56776
Target:  5'- aUCCAgGuACCCGGCGGCC-CGCg-- -3'
miRNA:   3'- aAGGUgCuUGGGUCGCUGGaGCGgcu -5'
5575 5' -58.7 NC_001806.1 + 107627 0.71 0.508158
Target:  5'- gUCCugGcccagcaGACCCA-CGGCCUCGCCu- -3'
miRNA:   3'- aAGGugC-------UUGGGUcGCUGGAGCGGcu -5'
5575 5' -58.7 NC_001806.1 + 107437 0.72 0.435271
Target:  5'- gUCCgACGucGCCgCAGCGACCaaCGCCGAc -3'
miRNA:   3'- aAGG-UGCu-UGG-GUCGCUGGa-GCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 100765 0.67 0.727643
Target:  5'- --gCGCGAgcucgGCCuCGGCGGCCagUCGCCGc -3'
miRNA:   3'- aagGUGCU-----UGG-GUCGCUGG--AGCGGCu -5'
5575 5' -58.7 NC_001806.1 + 100446 0.66 0.765756
Target:  5'- -aCCGgGGACaaGGCGACCccgCGCUGAc -3'
miRNA:   3'- aaGGUgCUUGggUCGCUGGa--GCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 95607 0.7 0.547976
Target:  5'- gUCCACGGcgaggugcuGCCC-GCGACgUUCGCCGc -3'
miRNA:   3'- aAGGUGCU---------UGGGuCGCUG-GAGCGGCu -5'
5575 5' -58.7 NC_001806.1 + 94950 0.69 0.59775
Target:  5'- -cUCGCG--UCCGGCGACCgCGCCGGc -3'
miRNA:   3'- aaGGUGCuuGGGUCGCUGGaGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 91520 0.66 0.784157
Target:  5'- -aCCugGAGCgCuGCGACggCGCCGu -3'
miRNA:   3'- aaGGugCUUGgGuCGCUGgaGCGGCu -5'
5575 5' -58.7 NC_001806.1 + 90505 0.66 0.810741
Target:  5'- -cCCcCG-GCCCGGCGACCUCaaacaCGAg -3'
miRNA:   3'- aaGGuGCuUGGGUCGCUGGAGcg---GCU- -5'
5575 5' -58.7 NC_001806.1 + 87658 0.66 0.793162
Target:  5'- gUUgCGCGGGCCCGGCGGCgUaguaGgCGGg -3'
miRNA:   3'- -AAgGUGCUUGGGUCGCUGgAg---CgGCU- -5'
5575 5' -58.7 NC_001806.1 + 86653 0.71 0.518729
Target:  5'- -cCCACGGccgucaGCCCGGCGGCCgugagGCCGc -3'
miRNA:   3'- aaGGUGCU------UGGGUCGCUGGag---CGGCu -5'
5575 5' -58.7 NC_001806.1 + 84962 0.66 0.784157
Target:  5'- --aCACGAGCgCCAGCGcuaucgggGCCuuuUCGCCGc -3'
miRNA:   3'- aagGUGCUUG-GGUCGC--------UGG---AGCGGCu -5'
5575 5' -58.7 NC_001806.1 + 84194 0.66 0.784157
Target:  5'- -aCC-CGAuGCCCAGCccGACCUCGaCCu- -3'
miRNA:   3'- aaGGuGCU-UGGGUCG--CUGGAGC-GGcu -5'
5575 5' -58.7 NC_001806.1 + 79729 0.67 0.746895
Target:  5'- cUUCCGCGAccACCCaggguuGGCGGCCgccUGCCc- -3'
miRNA:   3'- -AAGGUGCU--UGGG------UCGCUGGa--GCGGcu -5'
5575 5' -58.7 NC_001806.1 + 78908 0.68 0.658195
Target:  5'- gUCCGCGcucaucGCCgAGCGGCCccUCGCCc- -3'
miRNA:   3'- aAGGUGCu-----UGGgUCGCUGG--AGCGGcu -5'
5575 5' -58.7 NC_001806.1 + 78592 0.66 0.784157
Target:  5'- -cCCACGGG-CCAGC-ACgUCGCCGu -3'
miRNA:   3'- aaGGUGCUUgGGUCGcUGgAGCGGCu -5'
5575 5' -58.7 NC_001806.1 + 77388 0.68 0.688248
Target:  5'- --gCGCGGGCgCGGCGGCCgCGCCc- -3'
miRNA:   3'- aagGUGCUUGgGUCGCUGGaGCGGcu -5'
5575 5' -58.7 NC_001806.1 + 77059 0.69 0.607804
Target:  5'- -gCUGCGAGCCCAGCGggacuacgagcGCCUuccCGCCa- -3'
miRNA:   3'- aaGGUGCUUGGGUCGC-----------UGGA---GCGGcu -5'
5575 5' -58.7 NC_001806.1 + 76307 0.75 0.294491
Target:  5'- aUCCGCGGugcgcaacgACCCGGCGGCggcCGCCGAg -3'
miRNA:   3'- aAGGUGCU---------UGGGUCGCUGga-GCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.