Results 41 - 60 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5575 | 5' | -58.7 | NC_001806.1 | + | 132727 | 0.75 | 0.315277 |
Target: 5'- -cCCGCGAgcugGCCCGGCGugGCCUCGgCGGc -3' miRNA: 3'- aaGGUGCU----UGGGUCGC--UGGAGCgGCU- -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 44292 | 0.75 | 0.315277 |
Target: 5'- -aCCAgGAGCUgGGCGACCUuggCGCCGGc -3' miRNA: 3'- aaGGUgCUUGGgUCGCUGGA---GCGGCU- -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 76307 | 0.75 | 0.294491 |
Target: 5'- aUCCGCGGugcgcaacgACCCGGCGGCggcCGCCGAg -3' miRNA: 3'- aAGGUGCU---------UGGGUCGCUGga-GCGGCU- -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 21404 | 0.75 | 0.287804 |
Target: 5'- aUCC-CGAcgcccgACCCcGCGGCCUCGCCGc -3' miRNA: 3'- aAGGuGCU------UGGGuCGCUGGAGCGGCu -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 4918 | 0.75 | 0.287804 |
Target: 5'- -aCgGCGucCCCGGCGuCCUCGCCGGc -3' miRNA: 3'- aaGgUGCuuGGGUCGCuGGAGCGGCU- -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 123240 | 0.71 | 0.499578 |
Target: 5'- -cCCACGcGGCCCuGCGccgacGCCUgGCCGAg -3' miRNA: 3'- aaGGUGC-UUGGGuCGC-----UGGAgCGGCU- -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 107627 | 0.71 | 0.508158 |
Target: 5'- gUCCugGcccagcaGACCCA-CGGCCUCGCCu- -3' miRNA: 3'- aAGGugC-------UUGGGUcGCUGGAGCGGcu -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 77059 | 0.69 | 0.607804 |
Target: 5'- -gCUGCGAGCCCAGCGggacuacgagcGCCUuccCGCCa- -3' miRNA: 3'- aaGGUGCUUGGGUCGC-----------UGGA---GCGGcu -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 76218 | 0.69 | 0.59775 |
Target: 5'- aUCCGCGAucGCCUGGaCGcCCUCcggGCCGAc -3' miRNA: 3'- aAGGUGCU--UGGGUC-GCuGGAG---CGGCU- -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 94950 | 0.69 | 0.59775 |
Target: 5'- -cUCGCG--UCCGGCGACCgCGCCGGc -3' miRNA: 3'- aaGGUGCuuGGGUCGCUGGaGCGGCU- -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 31863 | 0.7 | 0.577721 |
Target: 5'- uUUCCGCGAgcgccugcccGCCCGGacuGACCUgGCCu- -3' miRNA: 3'- -AAGGUGCU----------UGGGUCg--CUGGAgCGGcu -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 108524 | 0.7 | 0.56776 |
Target: 5'- aUCCAgGuACCCGGCGGCC-CGCg-- -3' miRNA: 3'- aAGGUgCuUGGGUCGCUGGaGCGgcu -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 45791 | 0.7 | 0.56776 |
Target: 5'- gUCCGCGcauccGACCCuAGCGugUUCGUgGAa -3' miRNA: 3'- aAGGUGC-----UUGGG-UCGCugGAGCGgCU- -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 56624 | 0.7 | 0.56776 |
Target: 5'- -gCCGCGcGACCCuggccgguGCGACCUCaucgGCCGGc -3' miRNA: 3'- aaGGUGC-UUGGGu-------CGCUGGAG----CGGCU- -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 95607 | 0.7 | 0.547976 |
Target: 5'- gUCCACGGcgaggugcuGCCC-GCGACgUUCGCCGc -3' miRNA: 3'- aAGGUGCU---------UGGGuCGCUG-GAGCGGCu -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 125566 | 0.71 | 0.528413 |
Target: 5'- cUCCugGGggcACCCAcgcccGCGACCcggaCGCCGAu -3' miRNA: 3'- aAGGugCU---UGGGU-----CGCUGGa---GCGGCU- -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 86653 | 0.71 | 0.518729 |
Target: 5'- -cCCACGGccgucaGCCCGGCGGCCgugagGCCGc -3' miRNA: 3'- aaGGUGCU------UGGGUCGCUGGag---CGGCu -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 4339 | 0.71 | 0.518729 |
Target: 5'- --gCGCGGGCCCGGCGGCgCUCGaugCGGc -3' miRNA: 3'- aagGUGCUUGGGUCGCUG-GAGCg--GCU- -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 20655 | 0.71 | 0.518729 |
Target: 5'- -gCCACGGGCCCccGGCGugCcggCGUCGGg -3' miRNA: 3'- aaGGUGCUUGGG--UCGCugGa--GCGGCU- -5' |
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5575 | 5' | -58.7 | NC_001806.1 | + | 24845 | 0.71 | 0.518729 |
Target: 5'- -gCCACGGGCCgCAGCGGCaccgUGCUGGc -3' miRNA: 3'- aaGGUGCUUGG-GUCGCUGga--GCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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