miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5575 5' -58.7 NC_001806.1 + 84194 0.66 0.784157
Target:  5'- -aCC-CGAuGCCCAGCccGACCUCGaCCu- -3'
miRNA:   3'- aaGGuGCU-UGGGUCG--CUGGAGC-GGcu -5'
5575 5' -58.7 NC_001806.1 + 78592 0.66 0.784157
Target:  5'- -cCCACGGG-CCAGC-ACgUCGCCGu -3'
miRNA:   3'- aaGGUGCUUgGGUCGcUGgAGCGGCu -5'
5575 5' -58.7 NC_001806.1 + 139737 0.66 0.784157
Target:  5'- -gCCACG---CCAG-GGCCUCGCUGAc -3'
miRNA:   3'- aaGGUGCuugGGUCgCUGGAGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 64153 0.66 0.775019
Target:  5'- -gCCGCGcguGGCCCGGCaGGCCaaaaaGCCGGc -3'
miRNA:   3'- aaGGUGC---UUGGGUCG-CUGGag---CGGCU- -5'
5575 5' -58.7 NC_001806.1 + 21892 0.66 0.775019
Target:  5'- cUCCGCGGGCCgCAuCGAgCgcCGCCGGg -3'
miRNA:   3'- aAGGUGCUUGG-GUcGCUgGa-GCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 138683 0.66 0.775019
Target:  5'- -gCCugGAugcgACCCAGagGACCcUCGCCu- -3'
miRNA:   3'- aaGGugCU----UGGGUCg-CUGG-AGCGGcu -5'
5575 5' -58.7 NC_001806.1 + 1604 0.66 0.775019
Target:  5'- --aCACGGGCCgCAGCGGCg-CGCCc- -3'
miRNA:   3'- aagGUGCUUGG-GUCGCUGgaGCGGcu -5'
5575 5' -58.7 NC_001806.1 + 100446 0.66 0.765756
Target:  5'- -aCCGgGGACaaGGCGACCccgCGCUGAc -3'
miRNA:   3'- aaGGUgCUUGggUCGCUGGa--GCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 74363 0.66 0.765756
Target:  5'- -cCCGaGGACCUGGCGGCCUgGCUc- -3'
miRNA:   3'- aaGGUgCUUGGGUCGCUGGAgCGGcu -5'
5575 5' -58.7 NC_001806.1 + 49300 0.67 0.760143
Target:  5'- -cCCGCGAGCCCgacgacGGCGcgcgucggaagccccGCCcacaucccaUCGCCGAg -3'
miRNA:   3'- aaGGUGCUUGGG------UCGC---------------UGG---------AGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 22930 0.67 0.756379
Target:  5'- -cCCGCGGGCCCcGCuuCCcCGCCGc -3'
miRNA:   3'- aaGGUGCUUGGGuCGcuGGaGCGGCu -5'
5575 5' -58.7 NC_001806.1 + 34555 0.67 0.746895
Target:  5'- -gCCGCG-ACCCGGCcGCCggggagcguugUCGCCGu -3'
miRNA:   3'- aaGGUGCuUGGGUCGcUGG-----------AGCGGCu -5'
5575 5' -58.7 NC_001806.1 + 26792 0.67 0.746895
Target:  5'- -aCCGCGGagcACCUGGCGcGCCUgCGCCu- -3'
miRNA:   3'- aaGGUGCU---UGGGUCGC-UGGA-GCGGcu -5'
5575 5' -58.7 NC_001806.1 + 125844 0.67 0.746895
Target:  5'- -gCCGCGGGCCCccGGCcGCCgcggaCGCCGu -3'
miRNA:   3'- aaGGUGCUUGGG--UCGcUGGa----GCGGCu -5'
5575 5' -58.7 NC_001806.1 + 79729 0.67 0.746895
Target:  5'- cUUCCGCGAccACCCaggguuGGCGGCCgccUGCCc- -3'
miRNA:   3'- -AAGGUGCU--UGGG------UCGCUGGa--GCGGcu -5'
5575 5' -58.7 NC_001806.1 + 6708 0.67 0.741157
Target:  5'- cUUCCugGAcaccaugcggguuggGCCCAG-GACgUaCGCCGAc -3'
miRNA:   3'- -AAGGugCU---------------UGGGUCgCUGgA-GCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 49135 0.67 0.737313
Target:  5'- aUCCACccGCCCccGCG-CCUCGCCc- -3'
miRNA:   3'- aAGGUGcuUGGGu-CGCuGGAGCGGcu -5'
5575 5' -58.7 NC_001806.1 + 24789 0.67 0.737313
Target:  5'- -aCgACGAcgGCCCGGgGGCCcugcCGCCGGc -3'
miRNA:   3'- aaGgUGCU--UGGGUCgCUGGa---GCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 55178 0.67 0.737313
Target:  5'- -cCCugGGuCgCgGGCGucACCUCGCCGAu -3'
miRNA:   3'- aaGGugCUuG-GgUCGC--UGGAGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 73698 0.67 0.731521
Target:  5'- -cUCGCGGACCUGgagcugcagcuucgcGCGGCCcCGCCGGc -3'
miRNA:   3'- aaGGUGCUUGGGU---------------CGCUGGaGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.