miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5576 3' -61.1 NC_001806.1 + 73108 0.68 0.600899
Target:  5'- -cCGACCCGGccgggcCGCCGGUCgCCGAggCg -3'
miRNA:   3'- gcGCUGGGCCu-----GCGGCUAG-GGCUgaG- -5'
5576 3' -61.1 NC_001806.1 + 152048 0.68 0.591193
Target:  5'- aCGCcGCCCGGAcCGCCG--CCCGcCUUu -3'
miRNA:   3'- -GCGcUGGGCCU-GCGGCuaGGGCuGAG- -5'
5576 3' -61.1 NC_001806.1 + 106868 0.68 0.610627
Target:  5'- gGgGACgCGGGCGCCGAgcagggCCCGcgcccccCUCu -3'
miRNA:   3'- gCgCUGgGCCUGCGGCUa-----GGGCu------GAG- -5'
5576 3' -61.1 NC_001806.1 + 338 0.68 0.591193
Target:  5'- aCGCcGCCCGGAcCGCCG--CCCGcCUUu -3'
miRNA:   3'- -GCGcUGGGCCU-GCGGCuaGGGCuGAG- -5'
5576 3' -61.1 NC_001806.1 + 92929 0.68 0.581514
Target:  5'- gGCgGGCCUGGAgGCCGGggCCCGcgcGCUg -3'
miRNA:   3'- gCG-CUGGGCCUgCGGCUa-GGGC---UGAg -5'
5576 3' -61.1 NC_001806.1 + 96127 0.68 0.581514
Target:  5'- gCGCcGCCCGGACugcaGCCG--CCCGAcCUCc -3'
miRNA:   3'- -GCGcUGGGCCUG----CGGCuaGGGCU-GAG- -5'
5576 3' -61.1 NC_001806.1 + 1409 0.68 0.591193
Target:  5'- uGCGGCCC-GugGCCGAggcccagcgaaUCCCGGg-- -3'
miRNA:   3'- gCGCUGGGcCugCGGCU-----------AGGGCUgag -5'
5576 3' -61.1 NC_001806.1 + 51679 0.68 0.591193
Target:  5'- aGCGGCCUGGACGUC---CCCGAg-- -3'
miRNA:   3'- gCGCUGGGCCUGCGGcuaGGGCUgag -5'
5576 3' -61.1 NC_001806.1 + 4307 0.68 0.600899
Target:  5'- aGCGGCCCGuGGCGUCGcggCCGGC-Ca -3'
miRNA:   3'- gCGCUGGGC-CUGCGGCuagGGCUGaG- -5'
5576 3' -61.1 NC_001806.1 + 132148 0.68 0.600899
Target:  5'- gGCGGCgCGcGuuGCCGAgcaUCCCGACg- -3'
miRNA:   3'- gCGCUGgGC-CugCGGCU---AGGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 27460 0.68 0.610627
Target:  5'- gGCGGcCCCGGcCGCCcuUCCCG-CUUc -3'
miRNA:   3'- gCGCU-GGGCCuGCGGcuAGGGCuGAG- -5'
5576 3' -61.1 NC_001806.1 + 1915 0.68 0.63402
Target:  5'- aCGCGGCCCGaggccagcaccgugcGGCGCaGGUCCCG-Cg- -3'
miRNA:   3'- -GCGCUGGGC---------------CUGCGgCUAGGGCuGag -5'
5576 3' -61.1 NC_001806.1 + 100753 0.68 0.630119
Target:  5'- uGCG-CCCGGACaGCgCGAgCUCGGcCUCg -3'
miRNA:   3'- gCGCuGGGCCUG-CG-GCUaGGGCU-GAG- -5'
5576 3' -61.1 NC_001806.1 + 49354 0.68 0.620369
Target:  5'- aGCGuCCCGGcaGCGCCccGggCCCGAUg- -3'
miRNA:   3'- gCGCuGGGCC--UGCGG--CuaGGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 44303 0.68 0.620369
Target:  5'- gGCGACCUuGGCGCCGGcCUCGAg-- -3'
miRNA:   3'- gCGCUGGGcCUGCGGCUaGGGCUgag -5'
5576 3' -61.1 NC_001806.1 + 35562 0.68 0.591193
Target:  5'- gCGCG-CCCGG-CGCCGcgCCgaaCGACg- -3'
miRNA:   3'- -GCGCuGGGCCuGCGGCuaGG---GCUGag -5'
5576 3' -61.1 NC_001806.1 + 22099 0.68 0.620369
Target:  5'- gGCGGCCUGGGCgacaGCCG--CCCGGgcCUCu -3'
miRNA:   3'- gCGCUGGGCCUG----CGGCuaGGGCU--GAG- -5'
5576 3' -61.1 NC_001806.1 + 68589 0.68 0.620369
Target:  5'- gGCGGCCCuGGgGCCGGUCCgCGuC-Cg -3'
miRNA:   3'- gCGCUGGGcCUgCGGCUAGG-GCuGaG- -5'
5576 3' -61.1 NC_001806.1 + 104753 0.68 0.610627
Target:  5'- cCGUGACC--GACGCCG-UUCUGGCUCc -3'
miRNA:   3'- -GCGCUGGgcCUGCGGCuAGGGCUGAG- -5'
5576 3' -61.1 NC_001806.1 + 94798 0.68 0.610627
Target:  5'- gCGCuGGCCCGGACGCgGGgggCGACg- -3'
miRNA:   3'- -GCG-CUGGGCCUGCGgCUaggGCUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.