miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5576 3' -61.1 NC_001806.1 + 31091 0.72 0.385026
Target:  5'- gGCGACCCGGcugcGgGCCGcgGUCcCCGGCUg -3'
miRNA:   3'- gCGCUGGGCC----UgCGGC--UAG-GGCUGAg -5'
5576 3' -61.1 NC_001806.1 + 123243 0.71 0.460533
Target:  5'- aCGCGGCCCuG-CGCCGAcgCCUGGC-Cg -3'
miRNA:   3'- -GCGCUGGGcCuGCGGCUa-GGGCUGaG- -5'
5576 3' -61.1 NC_001806.1 + 34556 0.71 0.460533
Target:  5'- cCGCGACCCGGcCGCCGGggagcguugUCgCCGuCg- -3'
miRNA:   3'- -GCGCUGGGCCuGCGGCU---------AG-GGCuGag -5'
5576 3' -61.1 NC_001806.1 + 67480 0.71 0.451752
Target:  5'- aGCGugCUGGcCGCCcuccggGGUCCCGACc- -3'
miRNA:   3'- gCGCugGGCCuGCGG------CUAGGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 22054 0.71 0.443064
Target:  5'- cCGUGGCCCGG-CGCCGGgccCCCGcCc- -3'
miRNA:   3'- -GCGCUGGGCCuGCGGCUa--GGGCuGag -5'
5576 3' -61.1 NC_001806.1 + 138855 0.71 0.425975
Target:  5'- gGgGGCCCGGACGauuuUCCCGACg- -3'
miRNA:   3'- gCgCUGGGCCUGCggcuAGGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 52762 0.71 0.417578
Target:  5'- -aCGACCCGGuCGCCGAgcccCCCG-CUg -3'
miRNA:   3'- gcGCUGGGCCuGCGGCUa---GGGCuGAg -5'
5576 3' -61.1 NC_001806.1 + 3580 0.7 0.514985
Target:  5'- gGCGAggaucCCCGcGGCGCCGuaCCCGGCg- -3'
miRNA:   3'- gCGCU-----GGGC-CUGCGGCuaGGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 69143 0.7 0.514985
Target:  5'- gCGCGugCggaCGGACGUggccguguuUGAUCCCGACg- -3'
miRNA:   3'- -GCGCugG---GCCUGCG---------GCUAGGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 57038 0.7 0.505717
Target:  5'- gGCcgGGCCCGGG-GCCGGggccCCCGGCUg -3'
miRNA:   3'- gCG--CUGGGCCUgCGGCUa---GGGCUGAg -5'
5576 3' -61.1 NC_001806.1 + 49642 0.7 0.505717
Target:  5'- aCGCGugCCGGGC-CCGGagcUCCgGGCg- -3'
miRNA:   3'- -GCGCugGGCCUGcGGCU---AGGgCUGag -5'
5576 3' -61.1 NC_001806.1 + 20353 0.7 0.496521
Target:  5'- gGCGGCCCuuGGGcCGCCcgccgucccguuGGUCCCGGCg- -3'
miRNA:   3'- gCGCUGGG--CCU-GCGG------------CUAGGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 2789 0.7 0.496521
Target:  5'- gGCGGCCCgGGGCGCCGcgggCUgGGCg- -3'
miRNA:   3'- gCGCUGGG-CCUGCGGCua--GGgCUGag -5'
5576 3' -61.1 NC_001806.1 + 2666 0.7 0.496521
Target:  5'- gGCGGCCgCGGGCGCCG---CCGugUg -3'
miRNA:   3'- gCGCUGG-GCCUGCGGCuagGGCugAg -5'
5576 3' -61.1 NC_001806.1 + 144968 0.7 0.487401
Target:  5'- gGCGGCCCGG-C-CCGGggcCCCGGCg- -3'
miRNA:   3'- gCGCUGGGCCuGcGGCUa--GGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 112260 0.7 0.487401
Target:  5'- gGUGGCCCGGGCGaccCUGGUCgCCGAgCUa -3'
miRNA:   3'- gCGCUGGGCCUGC---GGCUAG-GGCU-GAg -5'
5576 3' -61.1 NC_001806.1 + 77446 0.7 0.478361
Target:  5'- cCGCG-CCCGGGCGuCCGccccaCCCGGC-Ca -3'
miRNA:   3'- -GCGCuGGGCCUGC-GGCua---GGGCUGaG- -5'
5576 3' -61.1 NC_001806.1 + 89290 0.7 0.478361
Target:  5'- gGCGcaaaaaACCCGGACGCCGc-CCUGGC-Cg -3'
miRNA:   3'- gCGC------UGGGCCUGCGGCuaGGGCUGaG- -5'
5576 3' -61.1 NC_001806.1 + 4735 0.7 0.477461
Target:  5'- uCGCGGCCCcgggccgGGGC-CCGGUCgCCGGCg- -3'
miRNA:   3'- -GCGCUGGG-------CCUGcGGCUAG-GGCUGag -5'
5576 3' -61.1 NC_001806.1 + 6040 0.7 0.514985
Target:  5'- uGCGAgcaCUGG-CGCCGugCCCGACUCc -3'
miRNA:   3'- gCGCUg--GGCCuGCGGCuaGGGCUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.