Results 61 - 80 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5576 | 3' | -61.1 | NC_001806.1 | + | 35562 | 0.68 | 0.591193 |
Target: 5'- gCGCG-CCCGG-CGCCGcgCCgaaCGACg- -3' miRNA: 3'- -GCGCuGGGCCuGCGGCuaGG---GCUGag -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 51679 | 0.68 | 0.591193 |
Target: 5'- aGCGGCCUGGACGUC---CCCGAg-- -3' miRNA: 3'- gCGCUGGGCCUGCGGcuaGGGCUgag -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 1409 | 0.68 | 0.591193 |
Target: 5'- uGCGGCCC-GugGCCGAggcccagcgaaUCCCGGg-- -3' miRNA: 3'- gCGCUGGGcCugCGGCU-----------AGGGCUgag -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 4307 | 0.68 | 0.600899 |
Target: 5'- aGCGGCCCGuGGCGUCGcggCCGGC-Ca -3' miRNA: 3'- gCGCUGGGC-CUGCGGCuagGGCUGaG- -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 73108 | 0.68 | 0.600899 |
Target: 5'- -cCGACCCGGccgggcCGCCGGUCgCCGAggCg -3' miRNA: 3'- gcGCUGGGCCu-----GCGGCUAG-GGCUgaG- -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 132148 | 0.68 | 0.600899 |
Target: 5'- gGCGGCgCGcGuuGCCGAgcaUCCCGACg- -3' miRNA: 3'- gCGCUGgGC-CugCGGCU---AGGGCUGag -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 104753 | 0.68 | 0.610627 |
Target: 5'- cCGUGACC--GACGCCG-UUCUGGCUCc -3' miRNA: 3'- -GCGCUGGgcCUGCGGCuAGGGCUGAG- -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 106868 | 0.68 | 0.610627 |
Target: 5'- gGgGACgCGGGCGCCGAgcagggCCCGcgcccccCUCu -3' miRNA: 3'- gCgCUGgGCCUGCGGCUa-----GGGCu------GAG- -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 94798 | 0.68 | 0.610627 |
Target: 5'- gCGCuGGCCCGGACGCgGGgggCGACg- -3' miRNA: 3'- -GCG-CUGGGCCUGCGgCUaggGCUGag -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 27460 | 0.68 | 0.610627 |
Target: 5'- gGCGGcCCCGGcCGCCcuUCCCG-CUUc -3' miRNA: 3'- gCGCU-GGGCCuGCGGcuAGGGCuGAG- -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 49354 | 0.68 | 0.620369 |
Target: 5'- aGCGuCCCGGcaGCGCCccGggCCCGAUg- -3' miRNA: 3'- gCGCuGGGCC--UGCGG--CuaGGGCUGag -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 44303 | 0.68 | 0.620369 |
Target: 5'- gGCGACCUuGGCGCCGGcCUCGAg-- -3' miRNA: 3'- gCGCUGGGcCUGCGGCUaGGGCUgag -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 22099 | 0.68 | 0.620369 |
Target: 5'- gGCGGCCUGGGCgacaGCCG--CCCGGgcCUCu -3' miRNA: 3'- gCGCUGGGCCUG----CGGCuaGGGCU--GAG- -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 68589 | 0.68 | 0.620369 |
Target: 5'- gGCGGCCCuGGgGCCGGUCCgCGuC-Cg -3' miRNA: 3'- gCGCUGGGcCUgCGGCUAGG-GCuGaG- -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 100753 | 0.68 | 0.630119 |
Target: 5'- uGCG-CCCGGACaGCgCGAgCUCGGcCUCg -3' miRNA: 3'- gCGCuGGGCCUG-CG-GCUaGGGCU-GAG- -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 1915 | 0.68 | 0.63402 |
Target: 5'- aCGCGGCCCGaggccagcaccgugcGGCGCaGGUCCCG-Cg- -3' miRNA: 3'- -GCGCUGGGC---------------CUGCGgCUAGGGCuGag -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 1718 | 0.67 | 0.638896 |
Target: 5'- cCGCcGCCCGGccguccaGCGCCGGcagcacggCCCGGCg- -3' miRNA: 3'- -GCGcUGGGCC-------UGCGGCUa-------GGGCUGag -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 27075 | 0.67 | 0.638896 |
Target: 5'- cCGUG-CCCGGGCccuggcccgcggaGCCGG-CCCGGCg- -3' miRNA: 3'- -GCGCuGGGCCUG-------------CGGCUaGGGCUGag -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 112329 | 0.67 | 0.638896 |
Target: 5'- gGCGggccaccGCCgGGAgGCCGucgaggCCUGGCUCg -3' miRNA: 3'- gCGC-------UGGgCCUgCGGCua----GGGCUGAG- -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 50150 | 0.67 | 0.639871 |
Target: 5'- -cCGGCCCcGACGCCGcgguGUUCCGcaGCUCg -3' miRNA: 3'- gcGCUGGGcCUGCGGC----UAGGGC--UGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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