miRNA display CGI


Results 61 - 80 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5576 3' -61.1 NC_001806.1 + 27136 0.69 0.571867
Target:  5'- gGCGGCCUGGGucuucCGCgGAgcUCCCGggaGCUCc -3'
miRNA:   3'- gCGCUGGGCCU-----GCGgCU--AGGGC---UGAG- -5'
5576 3' -61.1 NC_001806.1 + 22864 0.69 0.571867
Target:  5'- gGCGACCUGG-CgGCCG-UCCCGggGCUg -3'
miRNA:   3'- gCGCUGGGCCuG-CGGCuAGGGC--UGAg -5'
5576 3' -61.1 NC_001806.1 + 126486 0.69 0.571867
Target:  5'- uCGCG-CCCGGGCGC--GUCCCcggcccggaggaGGCUCu -3'
miRNA:   3'- -GCGCuGGGCCUGCGgcUAGGG------------CUGAG- -5'
5576 3' -61.1 NC_001806.1 + 125857 0.69 0.56226
Target:  5'- gGCcGCCgCGGACGCCGuggcgcCCCGGCc- -3'
miRNA:   3'- gCGcUGG-GCCUGCGGCua----GGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 20888 0.69 0.56226
Target:  5'- cCGCG-CCgGGACGCCGAUacgCgGACg- -3'
miRNA:   3'- -GCGCuGGgCCUGCGGCUAg--GgCUGag -5'
5576 3' -61.1 NC_001806.1 + 151461 0.69 0.56226
Target:  5'- gGCGGCCgCGGGCGC-GcUCCUGAC-Cg -3'
miRNA:   3'- gCGCUGG-GCCUGCGgCuAGGGCUGaG- -5'
5576 3' -61.1 NC_001806.1 + 88783 0.69 0.56226
Target:  5'- gGCcACCCGGugGCCu-UCCgGAgUCa -3'
miRNA:   3'- gCGcUGGGCCugCGGcuAGGgCUgAG- -5'
5576 3' -61.1 NC_001806.1 + 73435 0.69 0.552696
Target:  5'- aCGgGGCCCGGACgcacacccagGCCGGgguggccggCCCGGC-Cg -3'
miRNA:   3'- -GCgCUGGGCCUG----------CGGCUa--------GGGCUGaG- -5'
5576 3' -61.1 NC_001806.1 + 108536 0.69 0.552696
Target:  5'- gGCGGCCCGcgugcGGCugGCCGcgCCCGccGCUCc -3'
miRNA:   3'- gCGCUGGGC-----CUG--CGGCuaGGGC--UGAG- -5'
5576 3' -61.1 NC_001806.1 + 4447 0.69 0.552696
Target:  5'- gGCGuccGCCCGGgggcugccgGCGCCGcgCUCGACg- -3'
miRNA:   3'- gCGC---UGGGCC---------UGCGGCuaGGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 77163 0.69 0.543182
Target:  5'- gCGUGGCCCaacACGCCGAccugagcgCCCGGCUg -3'
miRNA:   3'- -GCGCUGGGcc-UGCGGCUa-------GGGCUGAg -5'
5576 3' -61.1 NC_001806.1 + 93587 0.69 0.533722
Target:  5'- gGCGGCCCGGGgGCCccgggaCCGGCa- -3'
miRNA:   3'- gCGCUGGGCCUgCGGcuag--GGCUGag -5'
5576 3' -61.1 NC_001806.1 + 33098 0.69 0.533722
Target:  5'- uCGCGugCCGGcgaGCgGGUCCgGACg- -3'
miRNA:   3'- -GCGCugGGCCug-CGgCUAGGgCUGag -5'
5576 3' -61.1 NC_001806.1 + 69143 0.7 0.514985
Target:  5'- gCGCGugCggaCGGACGUggccguguuUGAUCCCGACg- -3'
miRNA:   3'- -GCGCugG---GCCUGCG---------GCUAGGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 6040 0.7 0.514985
Target:  5'- uGCGAgcaCUGG-CGCCGugCCCGACUCc -3'
miRNA:   3'- gCGCUg--GGCCuGCGGCuaGGGCUGAG- -5'
5576 3' -61.1 NC_001806.1 + 134831 0.7 0.514985
Target:  5'- cCGCGGCUggCGGuCGCCGA-CCUGGCg- -3'
miRNA:   3'- -GCGCUGG--GCCuGCGGCUaGGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 117801 0.7 0.514985
Target:  5'- cCGCcACCCGGACGCCGcgaaacgcCCCGGg-- -3'
miRNA:   3'- -GCGcUGGGCCUGCGGCua------GGGCUgag -5'
5576 3' -61.1 NC_001806.1 + 3580 0.7 0.514985
Target:  5'- gGCGAggaucCCCGcGGCGCCGuaCCCGGCg- -3'
miRNA:   3'- gCGCU-----GGGC-CUGCGGCuaGGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 57038 0.7 0.505717
Target:  5'- gGCcgGGCCCGGG-GCCGGggccCCCGGCUg -3'
miRNA:   3'- gCG--CUGGGCCUgCGGCUa---GGGCUGAg -5'
5576 3' -61.1 NC_001806.1 + 49642 0.7 0.505717
Target:  5'- aCGCGugCCGGGC-CCGGagcUCCgGGCg- -3'
miRNA:   3'- -GCGCugGGCCUGcGGCU---AGGgCUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.