miRNA display CGI


Results 61 - 80 of 116 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5576 3' -61.1 NC_001806.1 + 63753 0.66 0.745147
Target:  5'- -aCGGCCCGcACGUCGGUgugCCaCGGCUCc -3'
miRNA:   3'- gcGCUGGGCcUGCGGCUA---GG-GCUGAG- -5'
5576 3' -61.1 NC_001806.1 + 66824 0.66 0.745147
Target:  5'- gGcCGGCCCgGGugGCCGGUgugCgCCGcCUCc -3'
miRNA:   3'- gC-GCUGGG-CCugCGGCUA---G-GGCuGAG- -5'
5576 3' -61.1 NC_001806.1 + 67480 0.71 0.451752
Target:  5'- aGCGugCUGGcCGCCcuccggGGUCCCGACc- -3'
miRNA:   3'- gCGCugGGCCuGCGG------CUAGGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 68589 0.68 0.620369
Target:  5'- gGCGGCCCuGGgGCCGGUCCgCGuC-Cg -3'
miRNA:   3'- gCGCUGGGcCUgCGGCUAGG-GCuGaG- -5'
5576 3' -61.1 NC_001806.1 + 69143 0.7 0.514985
Target:  5'- gCGCGugCggaCGGACGUggccguguuUGAUCCCGACg- -3'
miRNA:   3'- -GCGCugG---GCCUGCG---------GCUAGGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 73108 0.68 0.600899
Target:  5'- -cCGACCCGGccgggcCGCCGGUCgCCGAggCg -3'
miRNA:   3'- gcGCUGGGCCu-----GCGGCUAG-GGCUgaG- -5'
5576 3' -61.1 NC_001806.1 + 73435 0.69 0.552696
Target:  5'- aCGgGGCCCGGACgcacacccagGCCGGgguggccggCCCGGC-Cg -3'
miRNA:   3'- -GCgCUGGGCCUG----------CGGCUa--------GGGCUGaG- -5'
5576 3' -61.1 NC_001806.1 + 74575 0.66 0.745147
Target:  5'- uGCG-CCCGGcGCGUCGcccuacCCCGACg- -3'
miRNA:   3'- gCGCuGGGCC-UGCGGCua----GGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 76220 0.67 0.669064
Target:  5'- cCGCGaucGCCUGGACGCCc-UCCgGGC-Cg -3'
miRNA:   3'- -GCGC---UGGGCCUGCGGcuAGGgCUGaG- -5'
5576 3' -61.1 NC_001806.1 + 76576 0.66 0.726506
Target:  5'- cCGCG-CgCGaGCGCCGggCCCaGCUCg -3'
miRNA:   3'- -GCGCuGgGCcUGCGGCuaGGGcUGAG- -5'
5576 3' -61.1 NC_001806.1 + 77163 0.69 0.543182
Target:  5'- gCGUGGCCCaacACGCCGAccugagcgCCCGGCUg -3'
miRNA:   3'- -GCGCUGGGcc-UGCGGCUa-------GGGCUGAg -5'
5576 3' -61.1 NC_001806.1 + 77446 0.7 0.478361
Target:  5'- cCGCG-CCCGGGCGuCCGccccaCCCGGC-Ca -3'
miRNA:   3'- -GCGCuGGGCCUGC-GGCua---GGGCUGaG- -5'
5576 3' -61.1 NC_001806.1 + 78783 0.76 0.216544
Target:  5'- uCGCGGgCCGGACGCCGccuugcgcgAUgCCGugUCg -3'
miRNA:   3'- -GCGCUgGGCCUGCGGC---------UAgGGCugAG- -5'
5576 3' -61.1 NC_001806.1 + 81279 0.66 0.698011
Target:  5'- aCGgGGuCCCGGGCGUCGAagguUCUCGAa-- -3'
miRNA:   3'- -GCgCU-GGGCCUGCGGCU----AGGGCUgag -5'
5576 3' -61.1 NC_001806.1 + 88783 0.69 0.56226
Target:  5'- gGCcACCCGGugGCCu-UCCgGAgUCa -3'
miRNA:   3'- gCGcUGGGCCugCGGcuAGGgCUgAG- -5'
5576 3' -61.1 NC_001806.1 + 89290 0.7 0.478361
Target:  5'- gGCGcaaaaaACCCGGACGCCGc-CCUGGC-Cg -3'
miRNA:   3'- gCGC------UGGGCCUGCGGCuaGGGCUGaG- -5'
5576 3' -61.1 NC_001806.1 + 89552 0.73 0.338725
Target:  5'- gGCGGCCCGGuuuauucGCGUCGG-CCCGGC-Cg -3'
miRNA:   3'- gCGCUGGGCC-------UGCGGCUaGGGCUGaG- -5'
5576 3' -61.1 NC_001806.1 + 92929 0.68 0.581514
Target:  5'- gGCgGGCCUGGAgGCCGGggCCCGcgcGCUg -3'
miRNA:   3'- gCG-CUGGGCCUgCGGCUa-GGGC---UGAg -5'
5576 3' -61.1 NC_001806.1 + 93587 0.69 0.533722
Target:  5'- gGCGGCCCGGGgGCCccgggaCCGGCa- -3'
miRNA:   3'- gCGCUGGGCCUgCGGcuag--GGCUGag -5'
5576 3' -61.1 NC_001806.1 + 94798 0.68 0.610627
Target:  5'- gCGCuGGCCCGGACGCgGGgggCGACg- -3'
miRNA:   3'- -GCG-CUGGGCCUGCGgCUaggGCUGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.