miRNA display CGI


Results 81 - 100 of 116 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5576 3' -61.1 NC_001806.1 + 96127 0.68 0.581514
Target:  5'- gCGCcGCCCGGACugcaGCCG--CCCGAcCUCc -3'
miRNA:   3'- -GCGcUGGGCCUG----CGGCuaGGGCU-GAG- -5'
5576 3' -61.1 NC_001806.1 + 97368 0.66 0.735868
Target:  5'- --aGGCCCGGgccacgGCGCCGAccaCCCGgaaccuGCUCa -3'
miRNA:   3'- gcgCUGGGCC------UGCGGCUa--GGGC------UGAG- -5'
5576 3' -61.1 NC_001806.1 + 98086 0.67 0.666152
Target:  5'- uGCGugCCGGuCGCCGcggacaacgugaucGUCCaaaACUCg -3'
miRNA:   3'- gCGCugGGCCuGCGGC--------------UAGGgc-UGAG- -5'
5576 3' -61.1 NC_001806.1 + 100392 0.72 0.385026
Target:  5'- gGCGGCgCGGGgGCCGGggugCCCGAUg- -3'
miRNA:   3'- gCGCUGgGCCUgCGGCUa---GGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 100753 0.68 0.630119
Target:  5'- uGCG-CCCGGACaGCgCGAgCUCGGcCUCg -3'
miRNA:   3'- gCGCuGGGCCUG-CG-GCUaGGGCU-GAG- -5'
5576 3' -61.1 NC_001806.1 + 104753 0.68 0.610627
Target:  5'- cCGUGACC--GACGCCG-UUCUGGCUCc -3'
miRNA:   3'- -GCGCUGGgcCUGCGGCuAGGGCUGAG- -5'
5576 3' -61.1 NC_001806.1 + 105438 0.66 0.70757
Target:  5'- uGCGACCUGGcGCGCaCGuuugCCCGGg-- -3'
miRNA:   3'- gCGCUGGGCC-UGCG-GCua--GGGCUgag -5'
5576 3' -61.1 NC_001806.1 + 106868 0.68 0.610627
Target:  5'- gGgGACgCGGGCGCCGAgcagggCCCGcgcccccCUCu -3'
miRNA:   3'- gCgCUGgGCCUGCGGCUa-----GGGCu------GAG- -5'
5576 3' -61.1 NC_001806.1 + 108536 0.69 0.552696
Target:  5'- gGCGGCCCGcgugcGGCugGCCGcgCCCGccGCUCc -3'
miRNA:   3'- gCGCUGGGC-----CUG--CGGCuaGGGC--UGAG- -5'
5576 3' -61.1 NC_001806.1 + 112260 0.7 0.487401
Target:  5'- gGUGGCCCGGGCGaccCUGGUCgCCGAgCUa -3'
miRNA:   3'- gCGCUGGGCCUGC---GGCUAG-GGCU-GAg -5'
5576 3' -61.1 NC_001806.1 + 112329 0.67 0.638896
Target:  5'- gGCGggccaccGCCgGGAgGCCGucgaggCCUGGCUCg -3'
miRNA:   3'- gCGC-------UGGgCCUgCGGCua----GGGCUGAG- -5'
5576 3' -61.1 NC_001806.1 + 113853 0.72 0.393006
Target:  5'- gCGCGGCCCuGGAcCGCC-AUCgCGACUg -3'
miRNA:   3'- -GCGCUGGG-CCU-GCGGcUAGgGCUGAg -5'
5576 3' -61.1 NC_001806.1 + 117801 0.7 0.514985
Target:  5'- cCGCcACCCGGACGCCGcgaaacgcCCCGGg-- -3'
miRNA:   3'- -GCGcUGGGCCUGCGGCua------GGGCUgag -5'
5576 3' -61.1 NC_001806.1 + 117947 0.76 0.211526
Target:  5'- uCGCGguaccGCCCGacgacagcGACGCCGGUCCCGgagGCUCg -3'
miRNA:   3'- -GCGC-----UGGGC--------CUGCGGCUAGGGC---UGAG- -5'
5576 3' -61.1 NC_001806.1 + 123119 0.66 0.726506
Target:  5'- uCGCGcacACCgGGugGCgGGUCgCGGCg- -3'
miRNA:   3'- -GCGC---UGGgCCugCGgCUAGgGCUGag -5'
5576 3' -61.1 NC_001806.1 + 123243 0.71 0.460533
Target:  5'- aCGCGGCCCuG-CGCCGAcgCCUGGC-Cg -3'
miRNA:   3'- -GCGCUGGGcCuGCGGCUa-GGGCUGaG- -5'
5576 3' -61.1 NC_001806.1 + 123774 0.74 0.311309
Target:  5'- aGCGGCCCcucucuccaGGACGCCGccgucUCCCG-CUCc -3'
miRNA:   3'- gCGCUGGG---------CCUGCGGCu----AGGGCuGAG- -5'
5576 3' -61.1 NC_001806.1 + 125585 1.08 0.001425
Target:  5'- cCGCGACCCGGACGCCGAUCCCGACUCc -3'
miRNA:   3'- -GCGCUGGGCCUGCGGCUAGGGCUGAG- -5'
5576 3' -61.1 NC_001806.1 + 125857 0.69 0.56226
Target:  5'- gGCcGCCgCGGACGCCGuggcgcCCCGGCc- -3'
miRNA:   3'- gCGcUGG-GCCUGCGGCua----GGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 126436 0.67 0.649617
Target:  5'- gGCGuuCCGGGCauuuauccgGUCGAUCCCGAa-- -3'
miRNA:   3'- gCGCugGGCCUG---------CGGCUAGGGCUgag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.