miRNA display CGI


Results 61 - 80 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5576 3' -61.1 NC_001806.1 + 52762 0.71 0.417578
Target:  5'- -aCGACCCGGuCGCCGAgcccCCCG-CUg -3'
miRNA:   3'- gcGCUGGGCCuGCGGCUa---GGGCuGAg -5'
5576 3' -61.1 NC_001806.1 + 51679 0.68 0.591193
Target:  5'- aGCGGCCUGGACGUC---CCCGAg-- -3'
miRNA:   3'- gCGCUGGGCCUGCGGcuaGGGCUgag -5'
5576 3' -61.1 NC_001806.1 + 51404 0.66 0.745147
Target:  5'- gCGCGGCCgUGGGCGCCuugcggcaGcgCuCCGACg- -3'
miRNA:   3'- -GCGCUGG-GCCUGCGG--------CuaG-GGCUGag -5'
5576 3' -61.1 NC_001806.1 + 50150 0.67 0.639871
Target:  5'- -cCGGCCCcGACGCCGcgguGUUCCGcaGCUCg -3'
miRNA:   3'- gcGCUGGGcCUGCGGC----UAGGGC--UGAG- -5'
5576 3' -61.1 NC_001806.1 + 49642 0.7 0.505717
Target:  5'- aCGCGugCCGGGC-CCGGagcUCCgGGCg- -3'
miRNA:   3'- -GCGCugGGCCUGcGGCU---AGGgCUGag -5'
5576 3' -61.1 NC_001806.1 + 49354 0.68 0.620369
Target:  5'- aGCGuCCCGGcaGCGCCccGggCCCGAUg- -3'
miRNA:   3'- gCGCuGGGCC--UGCGG--CuaGGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 46064 0.66 0.735868
Target:  5'- gGUccCCCGGACGCgGcGUCCCGuuUCc -3'
miRNA:   3'- gCGcuGGGCCUGCGgC-UAGGGCugAG- -5'
5576 3' -61.1 NC_001806.1 + 44303 0.68 0.620369
Target:  5'- gGCGACCUuGGCGCCGGcCUCGAg-- -3'
miRNA:   3'- gCGCUGGGcCUGCGGCUaGGGCUgag -5'
5576 3' -61.1 NC_001806.1 + 42223 0.67 0.669064
Target:  5'- aGCGgaaACCCGGcCGCCGcggCCCcgcgggcguacuGGCUCg -3'
miRNA:   3'- gCGC---UGGGCCuGCGGCua-GGG------------CUGAG- -5'
5576 3' -61.1 NC_001806.1 + 35562 0.68 0.591193
Target:  5'- gCGCG-CCCGG-CGCCGcgCCgaaCGACg- -3'
miRNA:   3'- -GCGCuGGGCCuGCGGCuaGG---GCUGag -5'
5576 3' -61.1 NC_001806.1 + 34556 0.71 0.460533
Target:  5'- cCGCGACCCGGcCGCCGGggagcguugUCgCCGuCg- -3'
miRNA:   3'- -GCGCUGGGCCuGCGGCU---------AG-GGCuGag -5'
5576 3' -61.1 NC_001806.1 + 33380 0.66 0.735868
Target:  5'- cCGCGgcACCCGGACGCg---CCCGGa-- -3'
miRNA:   3'- -GCGC--UGGGCCUGCGgcuaGGGCUgag -5'
5576 3' -61.1 NC_001806.1 + 33098 0.69 0.533722
Target:  5'- uCGCGugCCGGcgaGCgGGUCCgGACg- -3'
miRNA:   3'- -GCGCugGGCCug-CGgCUAGGgCUGag -5'
5576 3' -61.1 NC_001806.1 + 31771 0.72 0.409283
Target:  5'- cCGCGGCCCGGGCuGCCugaccaccGAUcCCCGAaagCa -3'
miRNA:   3'- -GCGCUGGGCCUG-CGG--------CUA-GGGCUga-G- -5'
5576 3' -61.1 NC_001806.1 + 31091 0.72 0.385026
Target:  5'- gGCGACCCGGcugcGgGCCGcgGUCcCCGGCUg -3'
miRNA:   3'- gCGCUGGGCC----UgCGGC--UAG-GGCUGAg -5'
5576 3' -61.1 NC_001806.1 + 28682 0.7 0.469404
Target:  5'- aGCcGCCCgccauauuugggGGACGCCGugggaccCCCGACUCc -3'
miRNA:   3'- gCGcUGGG------------CCUGCGGCua-----GGGCUGAG- -5'
5576 3' -61.1 NC_001806.1 + 28522 0.72 0.409283
Target:  5'- aCGCagGGCCCGGGguCGCCGugggacccCCUGACUCa -3'
miRNA:   3'- -GCG--CUGGGCCU--GCGGCua------GGGCUGAG- -5'
5576 3' -61.1 NC_001806.1 + 27460 0.68 0.610627
Target:  5'- gGCGGcCCCGGcCGCCcuUCCCG-CUUc -3'
miRNA:   3'- gCGCU-GGGCCuGCGGcuAGGGCuGAG- -5'
5576 3' -61.1 NC_001806.1 + 27136 0.69 0.571867
Target:  5'- gGCGGCCUGGGucuucCGCgGAgcUCCCGggaGCUCc -3'
miRNA:   3'- gCGCUGGGCCU-----GCGgCU--AGGGC---UGAG- -5'
5576 3' -61.1 NC_001806.1 + 27075 0.67 0.638896
Target:  5'- cCGUG-CCCGGGCccuggcccgcggaGCCGG-CCCGGCg- -3'
miRNA:   3'- -GCGCuGGGCCUG-------------CGGCUaGGGCUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.