miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5576 3' -61.1 NC_001806.1 + 78783 0.76 0.216544
Target:  5'- uCGCGGgCCGGACGCCGccuugcgcgAUgCCGugUCg -3'
miRNA:   3'- -GCGCUgGGCCUGCGGC---------UAgGGCugAG- -5'
5576 3' -61.1 NC_001806.1 + 117947 0.76 0.211526
Target:  5'- uCGCGguaccGCCCGacgacagcGACGCCGGUCCCGgagGCUCg -3'
miRNA:   3'- -GCGC-----UGGGC--------CUGCGGCUAGGGC---UGAG- -5'
5576 3' -61.1 NC_001806.1 + 2509 0.77 0.206608
Target:  5'- aCGCGGCCUGGGCGgCGGgggcgggCCCGGCg- -3'
miRNA:   3'- -GCGCUGGGCCUGCgGCUa------GGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 4189 0.77 0.19707
Target:  5'- gGgGGCCCGG-CGCCGggCCaCGGCUCc -3'
miRNA:   3'- gCgCUGGGCCuGCGGCuaGG-GCUGAG- -5'
5576 3' -61.1 NC_001806.1 + 23361 0.79 0.147585
Target:  5'- aGCGGCgCGGACGCC---CCCGGCUCg -3'
miRNA:   3'- gCGCUGgGCCUGCGGcuaGGGCUGAG- -5'
5576 3' -61.1 NC_001806.1 + 123774 0.74 0.311309
Target:  5'- aGCGGCCCcucucuccaGGACGCCGccgucUCCCG-CUCc -3'
miRNA:   3'- gCGCUGGG---------CCUGCGGCu----AGGGCuGAG- -5'
5576 3' -61.1 NC_001806.1 + 89552 0.73 0.338725
Target:  5'- gGCGGCCCGGuuuauucGCGUCGG-CCCGGC-Cg -3'
miRNA:   3'- gCGCUGGGCC-------UGCGGCUaGGGCUGaG- -5'
5576 3' -61.1 NC_001806.1 + 4735 0.7 0.477461
Target:  5'- uCGCGGCCCcgggccgGGGC-CCGGUCgCCGGCg- -3'
miRNA:   3'- -GCGCUGGG-------CCUGcGGCUAG-GGCUGag -5'
5576 3' -61.1 NC_001806.1 + 28682 0.7 0.469404
Target:  5'- aGCcGCCCgccauauuugggGGACGCCGugggaccCCCGACUCc -3'
miRNA:   3'- gCGcUGGG------------CCUGCGGCua-----GGGCUGAG- -5'
5576 3' -61.1 NC_001806.1 + 123243 0.71 0.460533
Target:  5'- aCGCGGCCCuG-CGCCGAcgCCUGGC-Cg -3'
miRNA:   3'- -GCGCUGGGcCuGCGGCUa-GGGCUGaG- -5'
5576 3' -61.1 NC_001806.1 + 34556 0.71 0.460533
Target:  5'- cCGCGACCCGGcCGCCGGggagcguugUCgCCGuCg- -3'
miRNA:   3'- -GCGCUGGGCCuGCGGCU---------AG-GGCuGag -5'
5576 3' -61.1 NC_001806.1 + 67480 0.71 0.451752
Target:  5'- aGCGugCUGGcCGCCcuccggGGUCCCGACc- -3'
miRNA:   3'- gCGCugGGCCuGCGG------CUAGGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 22054 0.71 0.443064
Target:  5'- cCGUGGCCCGG-CGCCGGgccCCCGcCc- -3'
miRNA:   3'- -GCGCUGGGCCuGCGGCUa--GGGCuGag -5'
5576 3' -61.1 NC_001806.1 + 138855 0.71 0.425975
Target:  5'- gGgGGCCCGGACGauuuUCCCGACg- -3'
miRNA:   3'- gCgCUGGGCCUGCggcuAGGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 52762 0.71 0.417578
Target:  5'- -aCGACCCGGuCGCCGAgcccCCCG-CUg -3'
miRNA:   3'- gcGCUGGGCCuGCGGCUa---GGGCuGAg -5'
5576 3' -61.1 NC_001806.1 + 28522 0.72 0.409283
Target:  5'- aCGCagGGCCCGGGguCGCCGugggacccCCUGACUCa -3'
miRNA:   3'- -GCG--CUGGGCCU--GCGGCua------GGGCUGAG- -5'
5576 3' -61.1 NC_001806.1 + 31771 0.72 0.409283
Target:  5'- cCGCGGCCCGGGCuGCCugaccaccGAUcCCCGAaagCa -3'
miRNA:   3'- -GCGCUGGGCCUG-CGG--------CUA-GGGCUga-G- -5'
5576 3' -61.1 NC_001806.1 + 113853 0.72 0.393006
Target:  5'- gCGCGGCCCuGGAcCGCC-AUCgCGACUg -3'
miRNA:   3'- -GCGCUGGG-CCU-GCGGcUAGgGCUGAg -5'
5576 3' -61.1 NC_001806.1 + 100392 0.72 0.385026
Target:  5'- gGCGGCgCGGGgGCCGGggugCCCGAUg- -3'
miRNA:   3'- gCGCUGgGCCUgCGGCUa---GGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 31091 0.72 0.385026
Target:  5'- gGCGACCCGGcugcGgGCCGcgGUCcCCGGCUg -3'
miRNA:   3'- gCGCUGGGCC----UgCGGC--UAG-GGCUGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.