Results 81 - 100 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5576 | 3' | -61.1 | NC_001806.1 | + | 117801 | 0.7 | 0.514985 |
Target: 5'- cCGCcACCCGGACGCCGcgaaacgcCCCGGg-- -3' miRNA: 3'- -GCGcUGGGCCUGCGGCua------GGGCUgag -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 93587 | 0.69 | 0.533722 |
Target: 5'- gGCGGCCCGGGgGCCccgggaCCGGCa- -3' miRNA: 3'- gCGCUGGGCCUgCGGcuag--GGCUGag -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 33098 | 0.69 | 0.533722 |
Target: 5'- uCGCGugCCGGcgaGCgGGUCCgGACg- -3' miRNA: 3'- -GCGCugGGCCug-CGgCUAGGgCUGag -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 77163 | 0.69 | 0.543182 |
Target: 5'- gCGUGGCCCaacACGCCGAccugagcgCCCGGCUg -3' miRNA: 3'- -GCGCUGGGcc-UGCGGCUa-------GGGCUGAg -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 73435 | 0.69 | 0.552696 |
Target: 5'- aCGgGGCCCGGACgcacacccagGCCGGgguggccggCCCGGC-Cg -3' miRNA: 3'- -GCgCUGGGCCUG----------CGGCUa--------GGGCUGaG- -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 108536 | 0.69 | 0.552696 |
Target: 5'- gGCGGCCCGcgugcGGCugGCCGcgCCCGccGCUCc -3' miRNA: 3'- gCGCUGGGC-----CUG--CGGCuaGGGC--UGAG- -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 4447 | 0.69 | 0.552696 |
Target: 5'- gGCGuccGCCCGGgggcugccgGCGCCGcgCUCGACg- -3' miRNA: 3'- gCGC---UGGGCC---------UGCGGCuaGGGCUGag -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 69143 | 0.7 | 0.514985 |
Target: 5'- gCGCGugCggaCGGACGUggccguguuUGAUCCCGACg- -3' miRNA: 3'- -GCGCugG---GCCUGCG---------GCUAGGGCUGag -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 57038 | 0.7 | 0.505717 |
Target: 5'- gGCcgGGCCCGGG-GCCGGggccCCCGGCUg -3' miRNA: 3'- gCG--CUGGGCCUgCGGCUa---GGGCUGAg -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 49642 | 0.7 | 0.505717 |
Target: 5'- aCGCGugCCGGGC-CCGGagcUCCgGGCg- -3' miRNA: 3'- -GCGCugGGCCUGcGGCU---AGGgCUGag -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 123243 | 0.71 | 0.460533 |
Target: 5'- aCGCGGCCCuG-CGCCGAcgCCUGGC-Cg -3' miRNA: 3'- -GCGCUGGGcCuGCGGCUa-GGGCUGaG- -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 28682 | 0.7 | 0.469404 |
Target: 5'- aGCcGCCCgccauauuugggGGACGCCGugggaccCCCGACUCc -3' miRNA: 3'- gCGcUGGG------------CCUGCGGCua-----GGGCUGAG- -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 4735 | 0.7 | 0.477461 |
Target: 5'- uCGCGGCCCcgggccgGGGC-CCGGUCgCCGGCg- -3' miRNA: 3'- -GCGCUGGG-------CCUGcGGCUAG-GGCUGag -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 89290 | 0.7 | 0.478361 |
Target: 5'- gGCGcaaaaaACCCGGACGCCGc-CCUGGC-Cg -3' miRNA: 3'- gCGC------UGGGCCUGCGGCuaGGGCUGaG- -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 77446 | 0.7 | 0.478361 |
Target: 5'- cCGCG-CCCGGGCGuCCGccccaCCCGGC-Ca -3' miRNA: 3'- -GCGCuGGGCCUGC-GGCua---GGGCUGaG- -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 112260 | 0.7 | 0.487401 |
Target: 5'- gGUGGCCCGGGCGaccCUGGUCgCCGAgCUa -3' miRNA: 3'- gCGCUGGGCCUGC---GGCUAG-GGCU-GAg -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 144968 | 0.7 | 0.487401 |
Target: 5'- gGCGGCCCGG-C-CCGGggcCCCGGCg- -3' miRNA: 3'- gCGCUGGGCCuGcGGCUa--GGGCUGag -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 2666 | 0.7 | 0.496521 |
Target: 5'- gGCGGCCgCGGGCGCCG---CCGugUg -3' miRNA: 3'- gCGCUGG-GCCUGCGGCuagGGCugAg -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 2789 | 0.7 | 0.496521 |
Target: 5'- gGCGGCCCgGGGCGCCGcgggCUgGGCg- -3' miRNA: 3'- gCGCUGGG-CCUGCGGCua--GGgCUGag -5' |
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5576 | 3' | -61.1 | NC_001806.1 | + | 20353 | 0.7 | 0.496521 |
Target: 5'- gGCGGCCCuuGGGcCGCCcgccgucccguuGGUCCCGGCg- -3' miRNA: 3'- gCGCUGGG--CCU-GCGG------------CUAGGGCUGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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