miRNA display CGI


Results 81 - 100 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5576 3' -61.1 NC_001806.1 + 117801 0.7 0.514985
Target:  5'- cCGCcACCCGGACGCCGcgaaacgcCCCGGg-- -3'
miRNA:   3'- -GCGcUGGGCCUGCGGCua------GGGCUgag -5'
5576 3' -61.1 NC_001806.1 + 93587 0.69 0.533722
Target:  5'- gGCGGCCCGGGgGCCccgggaCCGGCa- -3'
miRNA:   3'- gCGCUGGGCCUgCGGcuag--GGCUGag -5'
5576 3' -61.1 NC_001806.1 + 33098 0.69 0.533722
Target:  5'- uCGCGugCCGGcgaGCgGGUCCgGACg- -3'
miRNA:   3'- -GCGCugGGCCug-CGgCUAGGgCUGag -5'
5576 3' -61.1 NC_001806.1 + 77163 0.69 0.543182
Target:  5'- gCGUGGCCCaacACGCCGAccugagcgCCCGGCUg -3'
miRNA:   3'- -GCGCUGGGcc-UGCGGCUa-------GGGCUGAg -5'
5576 3' -61.1 NC_001806.1 + 73435 0.69 0.552696
Target:  5'- aCGgGGCCCGGACgcacacccagGCCGGgguggccggCCCGGC-Cg -3'
miRNA:   3'- -GCgCUGGGCCUG----------CGGCUa--------GGGCUGaG- -5'
5576 3' -61.1 NC_001806.1 + 108536 0.69 0.552696
Target:  5'- gGCGGCCCGcgugcGGCugGCCGcgCCCGccGCUCc -3'
miRNA:   3'- gCGCUGGGC-----CUG--CGGCuaGGGC--UGAG- -5'
5576 3' -61.1 NC_001806.1 + 4447 0.69 0.552696
Target:  5'- gGCGuccGCCCGGgggcugccgGCGCCGcgCUCGACg- -3'
miRNA:   3'- gCGC---UGGGCC---------UGCGGCuaGGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 69143 0.7 0.514985
Target:  5'- gCGCGugCggaCGGACGUggccguguuUGAUCCCGACg- -3'
miRNA:   3'- -GCGCugG---GCCUGCG---------GCUAGGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 57038 0.7 0.505717
Target:  5'- gGCcgGGCCCGGG-GCCGGggccCCCGGCUg -3'
miRNA:   3'- gCG--CUGGGCCUgCGGCUa---GGGCUGAg -5'
5576 3' -61.1 NC_001806.1 + 49642 0.7 0.505717
Target:  5'- aCGCGugCCGGGC-CCGGagcUCCgGGCg- -3'
miRNA:   3'- -GCGCugGGCCUGcGGCU---AGGgCUGag -5'
5576 3' -61.1 NC_001806.1 + 123243 0.71 0.460533
Target:  5'- aCGCGGCCCuG-CGCCGAcgCCUGGC-Cg -3'
miRNA:   3'- -GCGCUGGGcCuGCGGCUa-GGGCUGaG- -5'
5576 3' -61.1 NC_001806.1 + 28682 0.7 0.469404
Target:  5'- aGCcGCCCgccauauuugggGGACGCCGugggaccCCCGACUCc -3'
miRNA:   3'- gCGcUGGG------------CCUGCGGCua-----GGGCUGAG- -5'
5576 3' -61.1 NC_001806.1 + 4735 0.7 0.477461
Target:  5'- uCGCGGCCCcgggccgGGGC-CCGGUCgCCGGCg- -3'
miRNA:   3'- -GCGCUGGG-------CCUGcGGCUAG-GGCUGag -5'
5576 3' -61.1 NC_001806.1 + 89290 0.7 0.478361
Target:  5'- gGCGcaaaaaACCCGGACGCCGc-CCUGGC-Cg -3'
miRNA:   3'- gCGC------UGGGCCUGCGGCuaGGGCUGaG- -5'
5576 3' -61.1 NC_001806.1 + 77446 0.7 0.478361
Target:  5'- cCGCG-CCCGGGCGuCCGccccaCCCGGC-Ca -3'
miRNA:   3'- -GCGCuGGGCCUGC-GGCua---GGGCUGaG- -5'
5576 3' -61.1 NC_001806.1 + 112260 0.7 0.487401
Target:  5'- gGUGGCCCGGGCGaccCUGGUCgCCGAgCUa -3'
miRNA:   3'- gCGCUGGGCCUGC---GGCUAG-GGCU-GAg -5'
5576 3' -61.1 NC_001806.1 + 144968 0.7 0.487401
Target:  5'- gGCGGCCCGG-C-CCGGggcCCCGGCg- -3'
miRNA:   3'- gCGCUGGGCCuGcGGCUa--GGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 2666 0.7 0.496521
Target:  5'- gGCGGCCgCGGGCGCCG---CCGugUg -3'
miRNA:   3'- gCGCUGG-GCCUGCGGCuagGGCugAg -5'
5576 3' -61.1 NC_001806.1 + 2789 0.7 0.496521
Target:  5'- gGCGGCCCgGGGCGCCGcgggCUgGGCg- -3'
miRNA:   3'- gCGCUGGG-CCUGCGGCua--GGgCUGag -5'
5576 3' -61.1 NC_001806.1 + 20353 0.7 0.496521
Target:  5'- gGCGGCCCuuGGGcCGCCcgccgucccguuGGUCCCGGCg- -3'
miRNA:   3'- gCGCUGGG--CCU-GCGG------------CUAGGGCUGag -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.