miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5576 3' -61.1 NC_001806.1 + 21981 0.66 0.717071
Target:  5'- gGuCGAgCUGGACGCCGA-CgCGAcCUCc -3'
miRNA:   3'- gC-GCUgGGCCUGCGGCUaGgGCU-GAG- -5'
5576 3' -61.1 NC_001806.1 + 126651 0.66 0.713278
Target:  5'- -cCGACCuCGGACGCCacaccaucuccCCCGugUCc -3'
miRNA:   3'- gcGCUGG-GCCUGCGGcua--------GGGCugAG- -5'
5576 3' -61.1 NC_001806.1 + 26976 0.66 0.70757
Target:  5'- cCGCGGCUCguGGGCccgcgagcggGCCGA-CCgGGCUCg -3'
miRNA:   3'- -GCGCUGGG--CCUG----------CGGCUaGGgCUGAG- -5'
5576 3' -61.1 NC_001806.1 + 105438 0.66 0.70757
Target:  5'- uGCGACCUGGcGCGCaCGuuugCCCGGg-- -3'
miRNA:   3'- gCGCUGGGCC-UGCG-GCua--GGGCUgag -5'
5576 3' -61.1 NC_001806.1 + 81279 0.66 0.698011
Target:  5'- aCGgGGuCCCGGGCGUCGAagguUCUCGAa-- -3'
miRNA:   3'- -GCgCU-GGGCCUGCGGCU----AGGGCUgag -5'
5576 3' -61.1 NC_001806.1 + 136704 0.67 0.688402
Target:  5'- cCGCGGgCCGccacGugGCCGAgcagUCCGcCUCg -3'
miRNA:   3'- -GCGCUgGGC----CugCGGCUa---GGGCuGAG- -5'
5576 3' -61.1 NC_001806.1 + 146862 0.67 0.688402
Target:  5'- cCGCGGCCCGca-GCCGGgucgccauguuUCCCGuCUg -3'
miRNA:   3'- -GCGCUGGGCcugCGGCU-----------AGGGCuGAg -5'
5576 3' -61.1 NC_001806.1 + 20473 0.67 0.688402
Target:  5'- uCGgGGCCCGGGCcCCGcccccugCCCGuucCUCg -3'
miRNA:   3'- -GCgCUGGGCCUGcGGCua-----GGGCu--GAG- -5'
5576 3' -61.1 NC_001806.1 + 3100 0.67 0.688402
Target:  5'- gGCGGCCgCGGagcucggcagGCGCgGGUCCCGcgGCa- -3'
miRNA:   3'- gCGCUGG-GCC----------UGCGgCUAGGGC--UGag -5'
5576 3' -61.1 NC_001806.1 + 23219 0.67 0.687439
Target:  5'- gGCGGCcagcgcaCCGGACGCCG---CCGACg- -3'
miRNA:   3'- gCGCUG-------GGCCUGCGGCuagGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 26398 0.67 0.67875
Target:  5'- uCGCGGCCCc--CGCCGccCCCGGC-Cg -3'
miRNA:   3'- -GCGCUGGGccuGCGGCuaGGGCUGaG- -5'
5576 3' -61.1 NC_001806.1 + 42223 0.67 0.669064
Target:  5'- aGCGgaaACCCGGcCGCCGcggCCCcgcgggcguacuGGCUCg -3'
miRNA:   3'- gCGC---UGGGCCuGCGGCua-GGG------------CUGAG- -5'
5576 3' -61.1 NC_001806.1 + 76220 0.67 0.669064
Target:  5'- cCGCGaucGCCUGGACGCCc-UCCgGGC-Cg -3'
miRNA:   3'- -GCGC---UGGGCCUGCGGcuAGGgCUGaG- -5'
5576 3' -61.1 NC_001806.1 + 98086 0.67 0.666152
Target:  5'- uGCGugCCGGuCGCCGcggacaacgugaucGUCCaaaACUCg -3'
miRNA:   3'- gCGCugGGCCuGCGGC--------------UAGGgc-UGAG- -5'
5576 3' -61.1 NC_001806.1 + 126436 0.67 0.649617
Target:  5'- gGCGuuCCGGGCauuuauccgGUCGAUCCCGAa-- -3'
miRNA:   3'- gCGCugGGCCUG---------CGGCUAGGGCUgag -5'
5576 3' -61.1 NC_001806.1 + 150941 0.67 0.649617
Target:  5'- cCGCcACCCGG-CGCCGGaaccgagCCCGgucggcccGCUCg -3'
miRNA:   3'- -GCGcUGGGCCuGCGGCUa------GGGC--------UGAG- -5'
5576 3' -61.1 NC_001806.1 + 50150 0.67 0.639871
Target:  5'- -cCGGCCCcGACGCCGcgguGUUCCGcaGCUCg -3'
miRNA:   3'- gcGCUGGGcCUGCGGC----UAGGGC--UGAG- -5'
5576 3' -61.1 NC_001806.1 + 27075 0.67 0.638896
Target:  5'- cCGUG-CCCGGGCccuggcccgcggaGCCGG-CCCGGCg- -3'
miRNA:   3'- -GCGCuGGGCCUG-------------CGGCUaGGGCUGag -5'
5576 3' -61.1 NC_001806.1 + 112329 0.67 0.638896
Target:  5'- gGCGggccaccGCCgGGAgGCCGucgaggCCUGGCUCg -3'
miRNA:   3'- gCGC-------UGGgCCUgCGGCua----GGGCUGAG- -5'
5576 3' -61.1 NC_001806.1 + 1718 0.67 0.638896
Target:  5'- cCGCcGCCCGGccguccaGCGCCGGcagcacggCCCGGCg- -3'
miRNA:   3'- -GCGcUGGGCC-------UGCGGCUa-------GGGCUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.