Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5578 | 3' | -56.9 | NC_001806.1 | + | 143146 | 0.69 | 0.777249 |
Target: 5'- aUGGGCGgGCCU---ACuuGGUUUCCc -3' miRNA: 3'- gACCCGCaUGGGcacUGggCCAAAGG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 150110 | 0.69 | 0.777249 |
Target: 5'- -gGGGCGgcCCCGUc-CCCGGggaCCa -3' miRNA: 3'- gaCCCGCauGGGCAcuGGGCCaaaGG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 66480 | 0.69 | 0.777249 |
Target: 5'- aCUGGGgGU--UCGUGACCUGGccagCCg -3' miRNA: 3'- -GACCCgCAugGGCACUGGGCCaaa-GG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 64955 | 0.69 | 0.758757 |
Target: 5'- --cGGCGUcggcGCCCG-GGCCgGGggUCCc -3' miRNA: 3'- gacCCGCA----UGGGCaCUGGgCCaaAGG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 64136 | 0.69 | 0.749346 |
Target: 5'- -aGGGCGauguggcgcaUGCCgcgCGUGGCCCGGcaggCCa -3' miRNA: 3'- gaCCCGC----------AUGG---GCACUGGGCCaaa-GG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 64821 | 0.69 | 0.739835 |
Target: 5'- -aGGcCGUGCCCGUucccagacguGGCCgGGggUCCg -3' miRNA: 3'- gaCCcGCAUGGGCA----------CUGGgCCaaAGG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 121411 | 0.68 | 0.830284 |
Target: 5'- -cGGGCGcgugcugcgccuuggGCCCGggGGCCUGGUggcaccUCCc -3' miRNA: 3'- gaCCCGCa--------------UGGGCa-CUGGGCCAa-----AGG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 5773 | 0.68 | 0.829461 |
Target: 5'- -gGGGCGggGCCCG-GGCCCcgacUUCCc -3' miRNA: 3'- gaCCCGCa-UGGGCaCUGGGcca-AAGG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 2771 | 0.68 | 0.829461 |
Target: 5'- -cGGGCGgGCCUGcgccgcggcGGCCCGGggcgCCg -3' miRNA: 3'- gaCCCGCaUGGGCa--------CUGGGCCaaa-GG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 135250 | 0.68 | 0.821147 |
Target: 5'- aUGGGCGcgccUACCCGgggGGCCCGa----- -3' miRNA: 3'- gACCCGC----AUGGGCa--CUGGGCcaaagg -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 38636 | 0.68 | 0.820306 |
Target: 5'- -cGGGUGguggauguccuuaUACCCGUgGugCCGGgg-CCg -3' miRNA: 3'- gaCCCGC-------------AUGGGCA-CugGGCCaaaGG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 7354 | 0.68 | 0.812666 |
Target: 5'- -aGGGU--ACCgCGUGACCCcaGGgaUCCa -3' miRNA: 3'- gaCCCGcaUGG-GCACUGGG--CCaaAGG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 54122 | 0.68 | 0.786311 |
Target: 5'- -gGGGUGU-CCCGgGGCCCaGGgg-CCg -3' miRNA: 3'- gaCCCGCAuGGGCaCUGGG-CCaaaGG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 4184 | 0.68 | 0.786311 |
Target: 5'- -gGGGCGgggGCCCGgcgccgGGCCaCGGc-UCCc -3' miRNA: 3'- gaCCCGCa--UGGGCa-----CUGG-GCCaaAGG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 13016 | 0.67 | 0.860927 |
Target: 5'- -gGGGCcuuggGCCCGUGccACCCGGcgaUCUu -3' miRNA: 3'- gaCCCGca---UGGGCAC--UGGGCCaa-AGG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 78687 | 0.67 | 0.853343 |
Target: 5'- cCUGGGCGcGCCCGUcGuCgUGGcgcUCCg -3' miRNA: 3'- -GACCCGCaUGGGCA-CuGgGCCaa-AGG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 19112 | 0.67 | 0.853343 |
Target: 5'- -gGGGUGgggGCCCG-GGgCUGcGUUUCCc -3' miRNA: 3'- gaCCCGCa--UGGGCaCUgGGC-CAAAGG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 113301 | 0.67 | 0.837604 |
Target: 5'- -gGGGaCGUuccCCCGgccGGCCCGGgggagaUCCa -3' miRNA: 3'- gaCCC-GCAu--GGGCa--CUGGGCCaa----AGG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 31053 | 0.66 | 0.908178 |
Target: 5'- -gGGGCGUACgUG-GuCCUGGUggaCCa -3' miRNA: 3'- gaCCCGCAUGgGCaCuGGGCCAaa-GG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 117989 | 0.66 | 0.875493 |
Target: 5'- -cGGGUGuUGgCCGUGAaCgCGGgaUCCa -3' miRNA: 3'- gaCCCGC-AUgGGCACU-GgGCCaaAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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