miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5578 3' -56.9 NC_001806.1 + 41394 0.66 0.902083
Target:  5'- cCUGGGCGcggaugcgAUCCGUGAgCCGccugCCc -3'
miRNA:   3'- -GACCCGCa-------UGGGCACUgGGCcaaaGG- -5'
5578 3' -56.9 NC_001806.1 + 42841 0.72 0.581118
Target:  5'- -cGGGUucGCCCGcgGGCCUGGUgggUCCc -3'
miRNA:   3'- gaCCCGcaUGGGCa-CUGGGCCAa--AGG- -5'
5578 3' -56.9 NC_001806.1 + 49633 0.66 0.902083
Target:  5'- uCUGGagggacGCGUGCCg--GGCCCGGagcUCCg -3'
miRNA:   3'- -GACC------CGCAUGGgcaCUGGGCCaa-AGG- -5'
5578 3' -56.9 NC_001806.1 + 51024 0.66 0.908178
Target:  5'- -aGcGGCGggUCCGUGuuggGCCCGcGggUCCg -3'
miRNA:   3'- gaC-CCGCauGGGCAC----UGGGC-CaaAGG- -5'
5578 3' -56.9 NC_001806.1 + 54122 0.68 0.786311
Target:  5'- -gGGGUGU-CCCGgGGCCCaGGgg-CCg -3'
miRNA:   3'- gaCCCGCAuGGGCaCUGGG-CCaaaGG- -5'
5578 3' -56.9 NC_001806.1 + 56507 0.72 0.600069
Target:  5'- cCUGGggccacaGCGgcagGCCCG-GGCCCGGcgUUCCc -3'
miRNA:   3'- -GACC-------CGCa---UGGGCaCUGGGCCa-AAGG- -5'
5578 3' -56.9 NC_001806.1 + 57031 0.71 0.621109
Target:  5'- aCUGGGUGgccggGCCCGgGGCCgGGg--CCc -3'
miRNA:   3'- -GACCCGCa----UGGGCaCUGGgCCaaaGG- -5'
5578 3' -56.9 NC_001806.1 + 64136 0.69 0.749346
Target:  5'- -aGGGCGauguggcgcaUGCCgcgCGUGGCCCGGcaggCCa -3'
miRNA:   3'- gaCCCGC----------AUGG---GCACUGGGCCaaa-GG- -5'
5578 3' -56.9 NC_001806.1 + 64821 0.69 0.739835
Target:  5'- -aGGcCGUGCCCGUucccagacguGGCCgGGggUCCg -3'
miRNA:   3'- gaCCcGCAUGGGCA----------CUGGgCCaaAGG- -5'
5578 3' -56.9 NC_001806.1 + 64955 0.69 0.758757
Target:  5'- --cGGCGUcggcGCCCG-GGCCgGGggUCCc -3'
miRNA:   3'- gacCCGCA----UGGGCaCUGGgCCaaAGG- -5'
5578 3' -56.9 NC_001806.1 + 66480 0.69 0.777249
Target:  5'- aCUGGGgGU--UCGUGACCUGGccagCCg -3'
miRNA:   3'- -GACCCgCAugGGCACUGGGCCaaa-GG- -5'
5578 3' -56.9 NC_001806.1 + 75264 0.71 0.631144
Target:  5'- cCUGGGCGcgGCCgccaGcGACCCGGccUCCc -3'
miRNA:   3'- -GACCCGCa-UGGg---CaCUGGGCCaaAGG- -5'
5578 3' -56.9 NC_001806.1 + 77509 0.66 0.894473
Target:  5'- -cGaGGCGUACCUGcgagugagcggaGGCCCGGgg-CCc -3'
miRNA:   3'- gaC-CCGCAUGGGCa-----------CUGGGCCaaaGG- -5'
5578 3' -56.9 NC_001806.1 + 78687 0.67 0.853343
Target:  5'- cCUGGGCGcGCCCGUcGuCgUGGcgcUCCg -3'
miRNA:   3'- -GACCCGCaUGGGCA-CuGgGCCaa-AGG- -5'
5578 3' -56.9 NC_001806.1 + 79269 0.7 0.681178
Target:  5'- -gGGGCGgaggGCUCGUuggGGCCCGGaagCCu -3'
miRNA:   3'- gaCCCGCa---UGGGCA---CUGGGCCaaaGG- -5'
5578 3' -56.9 NC_001806.1 + 80250 0.83 0.155746
Target:  5'- -aGGGCGguguugcGCCCGgaGGCCCGGUUUCCc -3'
miRNA:   3'- gaCCCGCa------UGGGCa-CUGGGCCAAAGG- -5'
5578 3' -56.9 NC_001806.1 + 84017 0.71 0.64118
Target:  5'- gUGGGCGUACgCG-GAUCUGG--UCCu -3'
miRNA:   3'- gACCCGCAUGgGCaCUGGGCCaaAGG- -5'
5578 3' -56.9 NC_001806.1 + 91201 0.66 0.899582
Target:  5'- -gGGGCGUACCUGgcgcgcgccgcggGACUCGuGggggCCa -3'
miRNA:   3'- gaCCCGCAUGGGCa------------CUGGGC-Caaa-GG- -5'
5578 3' -56.9 NC_001806.1 + 92386 0.77 0.318748
Target:  5'- -aGGGCGacguUGCCCGcgUGACCCuggGGUUUCCc -3'
miRNA:   3'- gaCCCGC----AUGGGC--ACUGGG---CCAAAGG- -5'
5578 3' -56.9 NC_001806.1 + 110330 0.66 0.895764
Target:  5'- -cGGGCGUGuuCCCGacacGGCCUacugGGuUUUCCg -3'
miRNA:   3'- gaCCCGCAU--GGGCa---CUGGG----CC-AAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.