Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5578 | 3' | -56.9 | NC_001806.1 | + | 79269 | 0.7 | 0.681178 |
Target: 5'- -gGGGCGgaggGCUCGUuggGGCCCGGaagCCu -3' miRNA: 3'- gaCCCGCa---UGGGCA---CUGGGCCaaaGG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 78687 | 0.67 | 0.853343 |
Target: 5'- cCUGGGCGcGCCCGUcGuCgUGGcgcUCCg -3' miRNA: 3'- -GACCCGCaUGGGCA-CuGgGCCaa-AGG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 77509 | 0.66 | 0.894473 |
Target: 5'- -cGaGGCGUACCUGcgagugagcggaGGCCCGGgg-CCc -3' miRNA: 3'- gaC-CCGCAUGGGCa-----------CUGGGCCaaaGG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 75264 | 0.71 | 0.631144 |
Target: 5'- cCUGGGCGcgGCCgccaGcGACCCGGccUCCc -3' miRNA: 3'- -GACCCGCa-UGGg---CaCUGGGCCaaAGG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 66480 | 0.69 | 0.777249 |
Target: 5'- aCUGGGgGU--UCGUGACCUGGccagCCg -3' miRNA: 3'- -GACCCgCAugGGCACUGGGCCaaa-GG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 64955 | 0.69 | 0.758757 |
Target: 5'- --cGGCGUcggcGCCCG-GGCCgGGggUCCc -3' miRNA: 3'- gacCCGCA----UGGGCaCUGGgCCaaAGG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 64821 | 0.69 | 0.739835 |
Target: 5'- -aGGcCGUGCCCGUucccagacguGGCCgGGggUCCg -3' miRNA: 3'- gaCCcGCAUGGGCA----------CUGGgCCaaAGG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 64136 | 0.69 | 0.749346 |
Target: 5'- -aGGGCGauguggcgcaUGCCgcgCGUGGCCCGGcaggCCa -3' miRNA: 3'- gaCCCGC----------AUGG---GCACUGGGCCaaa-GG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 57031 | 0.71 | 0.621109 |
Target: 5'- aCUGGGUGgccggGCCCGgGGCCgGGg--CCc -3' miRNA: 3'- -GACCCGCa----UGGGCaCUGGgCCaaaGG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 56507 | 0.72 | 0.600069 |
Target: 5'- cCUGGggccacaGCGgcagGCCCG-GGCCCGGcgUUCCc -3' miRNA: 3'- -GACC-------CGCa---UGGGCaCUGGGCCa-AAGG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 54122 | 0.68 | 0.786311 |
Target: 5'- -gGGGUGU-CCCGgGGCCCaGGgg-CCg -3' miRNA: 3'- gaCCCGCAuGGGCaCUGGG-CCaaaGG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 51024 | 0.66 | 0.908178 |
Target: 5'- -aGcGGCGggUCCGUGuuggGCCCGcGggUCCg -3' miRNA: 3'- gaC-CCGCauGGGCAC----UGGGC-CaaAGG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 49633 | 0.66 | 0.902083 |
Target: 5'- uCUGGagggacGCGUGCCg--GGCCCGGagcUCCg -3' miRNA: 3'- -GACC------CGCAUGGgcaCUGGGCCaa-AGG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 42841 | 0.72 | 0.581118 |
Target: 5'- -cGGGUucGCCCGcgGGCCUGGUgggUCCc -3' miRNA: 3'- gaCCCGcaUGGGCa-CUGGGCCAa--AGG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 41394 | 0.66 | 0.902083 |
Target: 5'- cCUGGGCGcggaugcgAUCCGUGAgCCGccugCCc -3' miRNA: 3'- -GACCCGCa-------UGGGCACUgGGCcaaaGG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 38636 | 0.68 | 0.820306 |
Target: 5'- -cGGGUGguggauguccuuaUACCCGUgGugCCGGgg-CCg -3' miRNA: 3'- gaCCCGC-------------AUGGGCA-CugGGCCaaaGG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 31053 | 0.66 | 0.908178 |
Target: 5'- -gGGGCGUACgUG-GuCCUGGUggaCCa -3' miRNA: 3'- gaCCCGCAUGgGCaCuGGGCCAaa-GG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 27063 | 0.71 | 0.64118 |
Target: 5'- -gGGGCccgagGCCCGUG-CCCGGg--CCc -3' miRNA: 3'- gaCCCGca---UGGGCACuGGGCCaaaGG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 22047 | 0.66 | 0.882465 |
Target: 5'- -cGGG-G-AgCCGUGGCCCGGcg-CCg -3' miRNA: 3'- gaCCCgCaUgGGCACUGGGCCaaaGG- -5' |
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5578 | 3' | -56.9 | NC_001806.1 | + | 20398 | 0.71 | 0.671216 |
Target: 5'- -cGGGCGggaCCGgggGGCCCGGggacggCCa -3' miRNA: 3'- gaCCCGCaugGGCa--CUGGGCCaaa---GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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