Results 41 - 55 of 55 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5578 | 3' | -56.9 | NC_001806.1 | + | 114921 | 0.71 | 0.64118 |
Target: 5'- cCUGGGCGUgggcuacaccGCCguCGUGGCCaCGGcaaccgUCCg -3' miRNA: 3'- -GACCCGCA----------UGG--GCACUGG-GCCaa----AGG- -5' |
|||||||
5578 | 3' | -56.9 | NC_001806.1 | + | 84017 | 0.71 | 0.64118 |
Target: 5'- gUGGGCGUACgCG-GAUCUGG--UCCu -3' miRNA: 3'- gACCCGCAUGgGCaCUGGGCCaaAGG- -5' |
|||||||
5578 | 3' | -56.9 | NC_001806.1 | + | 151469 | 0.71 | 0.64118 |
Target: 5'- -cGGGCGcGCUCcUGACCgCGGgUUCCg -3' miRNA: 3'- gaCCCGCaUGGGcACUGG-GCCaAAGG- -5' |
|||||||
5578 | 3' | -56.9 | NC_001806.1 | + | 143146 | 0.69 | 0.777249 |
Target: 5'- aUGGGCGgGCCU---ACuuGGUUUCCc -3' miRNA: 3'- gACCCGCaUGGGcacUGggCCAAAGG- -5' |
|||||||
5578 | 3' | -56.9 | NC_001806.1 | + | 150110 | 0.69 | 0.777249 |
Target: 5'- -gGGGCGgcCCCGUc-CCCGGggaCCa -3' miRNA: 3'- gaCCCGCauGGGCAcuGGGCCaaaGG- -5' |
|||||||
5578 | 3' | -56.9 | NC_001806.1 | + | 66480 | 0.69 | 0.777249 |
Target: 5'- aCUGGGgGU--UCGUGACCUGGccagCCg -3' miRNA: 3'- -GACCCgCAugGGCACUGGGCCaaa-GG- -5' |
|||||||
5578 | 3' | -56.9 | NC_001806.1 | + | 64955 | 0.69 | 0.758757 |
Target: 5'- --cGGCGUcggcGCCCG-GGCCgGGggUCCc -3' miRNA: 3'- gacCCGCA----UGGGCaCUGGgCCaaAGG- -5' |
|||||||
5578 | 3' | -56.9 | NC_001806.1 | + | 64136 | 0.69 | 0.749346 |
Target: 5'- -aGGGCGauguggcgcaUGCCgcgCGUGGCCCGGcaggCCa -3' miRNA: 3'- gaCCCGC----------AUGG---GCACUGGGCCaaa-GG- -5' |
|||||||
5578 | 3' | -56.9 | NC_001806.1 | + | 64821 | 0.69 | 0.739835 |
Target: 5'- -aGGcCGUGCCCGUucccagacguGGCCgGGggUCCg -3' miRNA: 3'- gaCCcGCAUGGGCA----------CUGGgCCaaAGG- -5' |
|||||||
5578 | 3' | -56.9 | NC_001806.1 | + | 112258 | 0.7 | 0.700976 |
Target: 5'- -aGGGUG-GCCCGggcGACCCuGGUcgCCg -3' miRNA: 3'- gaCCCGCaUGGGCa--CUGGG-CCAaaGG- -5' |
|||||||
5578 | 3' | -56.9 | NC_001806.1 | + | 79269 | 0.7 | 0.681178 |
Target: 5'- -gGGGCGgaggGCUCGUuggGGCCCGGaagCCu -3' miRNA: 3'- gaCCCGCa---UGGGCA---CUGGGCCaaaGG- -5' |
|||||||
5578 | 3' | -56.9 | NC_001806.1 | + | 20398 | 0.71 | 0.671216 |
Target: 5'- -cGGGCGggaCCGgggGGCCCGGggacggCCa -3' miRNA: 3'- gaCCCGCaugGGCa--CUGGGCCaaa---GG- -5' |
|||||||
5578 | 3' | -56.9 | NC_001806.1 | + | 125568 | 0.71 | 0.661224 |
Target: 5'- cCUGGGgGcacccacGCCCGcGACCCGGacgCCg -3' miRNA: 3'- -GACCCgCa------UGGGCaCUGGGCCaaaGG- -5' |
|||||||
5578 | 3' | -56.9 | NC_001806.1 | + | 4405 | 0.71 | 0.657221 |
Target: 5'- uUGGGCGcgGCCUcggagaggggggGUGGCCCGGgcgggggcggcgUCCg -3' miRNA: 3'- gACCCGCa-UGGG------------CACUGGGCCaa----------AGG- -5' |
|||||||
5578 | 3' | -56.9 | NC_001806.1 | + | 124840 | 1.11 | 0.00215 |
Target: 5'- cCUGGGCGUACCCGUGACCCGGUUUCCc -3' miRNA: 3'- -GACCCGCAUGGGCACUGGGCCAAAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home