miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5578 3' -56.9 NC_001806.1 + 124840 1.11 0.00215
Target:  5'- cCUGGGCGUACCCGUGACCCGGUUUCCc -3'
miRNA:   3'- -GACCCGCAUGGGCACUGGGCCAAAGG- -5'
5578 3' -56.9 NC_001806.1 + 80250 0.83 0.155746
Target:  5'- -aGGGCGguguugcGCCCGgaGGCCCGGUUUCCc -3'
miRNA:   3'- gaCCCGCa------UGGGCa-CUGGGCCAAAGG- -5'
5578 3' -56.9 NC_001806.1 + 5091 0.79 0.271738
Target:  5'- gUGGGCGgcgGCCCGUcgguggGGCCCGGggagCCg -3'
miRNA:   3'- gACCCGCa--UGGGCA------CUGGGCCaaa-GG- -5'
5578 3' -56.9 NC_001806.1 + 92386 0.77 0.318748
Target:  5'- -aGGGCGacguUGCCCGcgUGACCCuggGGUUUCCc -3'
miRNA:   3'- gaCCCGC----AUGGGC--ACUGGG---CCAAAGG- -5'
5578 3' -56.9 NC_001806.1 + 151529 0.74 0.484381
Target:  5'- uUGGGaCGgcGCCCGUgGGCCCGGgcggCCg -3'
miRNA:   3'- gACCC-GCa-UGGGCA-CUGGGCCaaa-GG- -5'
5578 3' -56.9 NC_001806.1 + 18426 0.73 0.552452
Target:  5'- uCUGcGGCGcgACCCGccccagaaucggaugGGCCCGGgcgUUCCa -3'
miRNA:   3'- -GAC-CCGCa-UGGGCa--------------CUGGGCCa--AAGG- -5'
5578 3' -56.9 NC_001806.1 + 13178 0.72 0.561307
Target:  5'- -aGGGCGUacuuacaggaGCCCuUGGCUCGGUgcUCCa -3'
miRNA:   3'- gaCCCGCA----------UGGGcACUGGGCCAa-AGG- -5'
5578 3' -56.9 NC_001806.1 + 42841 0.72 0.581118
Target:  5'- -cGGGUucGCCCGcgGGCCUGGUgggUCCc -3'
miRNA:   3'- gaCCCGcaUGGGCa-CUGGGCCAa--AGG- -5'
5578 3' -56.9 NC_001806.1 + 56507 0.72 0.600069
Target:  5'- cCUGGggccacaGCGgcagGCCCG-GGCCCGGcgUUCCc -3'
miRNA:   3'- -GACC-------CGCa---UGGGCaCUGGGCCa-AAGG- -5'
5578 3' -56.9 NC_001806.1 + 57031 0.71 0.621109
Target:  5'- aCUGGGUGgccggGCCCGgGGCCgGGg--CCc -3'
miRNA:   3'- -GACCCGCa----UGGGCaCUGGgCCaaaGG- -5'
5578 3' -56.9 NC_001806.1 + 75264 0.71 0.631144
Target:  5'- cCUGGGCGcgGCCgccaGcGACCCGGccUCCc -3'
miRNA:   3'- -GACCCGCa-UGGg---CaCUGGGCCaaAGG- -5'
5578 3' -56.9 NC_001806.1 + 27063 0.71 0.64118
Target:  5'- -gGGGCccgagGCCCGUG-CCCGGg--CCc -3'
miRNA:   3'- gaCCCGca---UGGGCACuGGGCCaaaGG- -5'
5578 3' -56.9 NC_001806.1 + 114921 0.71 0.64118
Target:  5'- cCUGGGCGUgggcuacaccGCCguCGUGGCCaCGGcaaccgUCCg -3'
miRNA:   3'- -GACCCGCA----------UGG--GCACUGG-GCCaa----AGG- -5'
5578 3' -56.9 NC_001806.1 + 84017 0.71 0.64118
Target:  5'- gUGGGCGUACgCG-GAUCUGG--UCCu -3'
miRNA:   3'- gACCCGCAUGgGCaCUGGGCCaaAGG- -5'
5578 3' -56.9 NC_001806.1 + 151469 0.71 0.64118
Target:  5'- -cGGGCGcGCUCcUGACCgCGGgUUCCg -3'
miRNA:   3'- gaCCCGCaUGGGcACUGG-GCCaAAGG- -5'
5578 3' -56.9 NC_001806.1 + 4405 0.71 0.657221
Target:  5'- uUGGGCGcgGCCUcggagaggggggGUGGCCCGGgcgggggcggcgUCCg -3'
miRNA:   3'- gACCCGCa-UGGG------------CACUGGGCCaa----------AGG- -5'
5578 3' -56.9 NC_001806.1 + 125568 0.71 0.661224
Target:  5'- cCUGGGgGcacccacGCCCGcGACCCGGacgCCg -3'
miRNA:   3'- -GACCCgCa------UGGGCaCUGGGCCaaaGG- -5'
5578 3' -56.9 NC_001806.1 + 20398 0.71 0.671216
Target:  5'- -cGGGCGggaCCGgggGGCCCGGggacggCCa -3'
miRNA:   3'- gaCCCGCaugGGCa--CUGGGCCaaa---GG- -5'
5578 3' -56.9 NC_001806.1 + 79269 0.7 0.681178
Target:  5'- -gGGGCGgaggGCUCGUuggGGCCCGGaagCCu -3'
miRNA:   3'- gaCCCGCa---UGGGCA---CUGGGCCaaaGG- -5'
5578 3' -56.9 NC_001806.1 + 112258 0.7 0.700976
Target:  5'- -aGGGUG-GCCCGggcGACCCuGGUcgCCg -3'
miRNA:   3'- gaCCCGCaUGGGCa--CUGGG-CCAaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.