miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5578 3' -56.9 NC_001806.1 + 113301 0.67 0.837604
Target:  5'- -gGGGaCGUuccCCCGgccGGCCCGGgggagaUCCa -3'
miRNA:   3'- gaCCC-GCAu--GGGCa--CUGGGCCaa----AGG- -5'
5578 3' -56.9 NC_001806.1 + 121411 0.68 0.830284
Target:  5'- -cGGGCGcgugcugcgccuuggGCCCGggGGCCUGGUggcaccUCCc -3'
miRNA:   3'- gaCCCGCa--------------UGGGCa-CUGGGCCAa-----AGG- -5'
5578 3' -56.9 NC_001806.1 + 5773 0.68 0.829461
Target:  5'- -gGGGCGggGCCCG-GGCCCcgacUUCCc -3'
miRNA:   3'- gaCCCGCa-UGGGCaCUGGGcca-AAGG- -5'
5578 3' -56.9 NC_001806.1 + 2771 0.68 0.829461
Target:  5'- -cGGGCGgGCCUGcgccgcggcGGCCCGGggcgCCg -3'
miRNA:   3'- gaCCCGCaUGGGCa--------CUGGGCCaaa-GG- -5'
5578 3' -56.9 NC_001806.1 + 135250 0.68 0.821147
Target:  5'- aUGGGCGcgccUACCCGgggGGCCCGa----- -3'
miRNA:   3'- gACCCGC----AUGGGCa--CUGGGCcaaagg -5'
5578 3' -56.9 NC_001806.1 + 38636 0.68 0.820306
Target:  5'- -cGGGUGguggauguccuuaUACCCGUgGugCCGGgg-CCg -3'
miRNA:   3'- gaCCCGC-------------AUGGGCA-CugGGCCaaaGG- -5'
5578 3' -56.9 NC_001806.1 + 7354 0.68 0.812666
Target:  5'- -aGGGU--ACCgCGUGACCCcaGGgaUCCa -3'
miRNA:   3'- gaCCCGcaUGG-GCACUGGG--CCaaAGG- -5'
5578 3' -56.9 NC_001806.1 + 54122 0.68 0.786311
Target:  5'- -gGGGUGU-CCCGgGGCCCaGGgg-CCg -3'
miRNA:   3'- gaCCCGCAuGGGCaCUGGG-CCaaaGG- -5'
5578 3' -56.9 NC_001806.1 + 4184 0.68 0.786311
Target:  5'- -gGGGCGgggGCCCGgcgccgGGCCaCGGc-UCCc -3'
miRNA:   3'- gaCCCGCa--UGGGCa-----CUGG-GCCaaAGG- -5'
5578 3' -56.9 NC_001806.1 + 66480 0.69 0.777249
Target:  5'- aCUGGGgGU--UCGUGACCUGGccagCCg -3'
miRNA:   3'- -GACCCgCAugGGCACUGGGCCaaa-GG- -5'
5578 3' -56.9 NC_001806.1 + 143146 0.69 0.777249
Target:  5'- aUGGGCGgGCCU---ACuuGGUUUCCc -3'
miRNA:   3'- gACCCGCaUGGGcacUGggCCAAAGG- -5'
5578 3' -56.9 NC_001806.1 + 150110 0.69 0.777249
Target:  5'- -gGGGCGgcCCCGUc-CCCGGggaCCa -3'
miRNA:   3'- gaCCCGCauGGGCAcuGGGCCaaaGG- -5'
5578 3' -56.9 NC_001806.1 + 64955 0.69 0.758757
Target:  5'- --cGGCGUcggcGCCCG-GGCCgGGggUCCc -3'
miRNA:   3'- gacCCGCA----UGGGCaCUGGgCCaaAGG- -5'
5578 3' -56.9 NC_001806.1 + 64136 0.69 0.749346
Target:  5'- -aGGGCGauguggcgcaUGCCgcgCGUGGCCCGGcaggCCa -3'
miRNA:   3'- gaCCCGC----------AUGG---GCACUGGGCCaaa-GG- -5'
5578 3' -56.9 NC_001806.1 + 64821 0.69 0.739835
Target:  5'- -aGGcCGUGCCCGUucccagacguGGCCgGGggUCCg -3'
miRNA:   3'- gaCCcGCAUGGGCA----------CUGGgCCaaAGG- -5'
5578 3' -56.9 NC_001806.1 + 112258 0.7 0.700976
Target:  5'- -aGGGUG-GCCCGggcGACCCuGGUcgCCg -3'
miRNA:   3'- gaCCCGCaUGGGCa--CUGGG-CCAaaGG- -5'
5578 3' -56.9 NC_001806.1 + 79269 0.7 0.681178
Target:  5'- -gGGGCGgaggGCUCGUuggGGCCCGGaagCCu -3'
miRNA:   3'- gaCCCGCa---UGGGCA---CUGGGCCaaaGG- -5'
5578 3' -56.9 NC_001806.1 + 20398 0.71 0.671216
Target:  5'- -cGGGCGggaCCGgggGGCCCGGggacggCCa -3'
miRNA:   3'- gaCCCGCaugGGCa--CUGGGCCaaa---GG- -5'
5578 3' -56.9 NC_001806.1 + 125568 0.71 0.661224
Target:  5'- cCUGGGgGcacccacGCCCGcGACCCGGacgCCg -3'
miRNA:   3'- -GACCCgCa------UGGGCaCUGGGCCaaaGG- -5'
5578 3' -56.9 NC_001806.1 + 4405 0.71 0.657221
Target:  5'- uUGGGCGcgGCCUcggagaggggggGUGGCCCGGgcgggggcggcgUCCg -3'
miRNA:   3'- gACCCGCa-UGGG------------CACUGGGCCaa----------AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.