miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5578 5' -52.3 NC_001806.1 + 27308 0.66 0.971062
Target:  5'- ---cCAACCAGC-GUcCGCCGaGuCUUCg -3'
miRNA:   3'- aauuGUUGGUCGaCA-GCGGC-CuGAAG- -5'
5578 5' -52.3 NC_001806.1 + 119959 0.66 0.971062
Target:  5'- -----cACCAGCUGUCucccGCUGGGCa-- -3'
miRNA:   3'- aauuguUGGUCGACAG----CGGCCUGaag -5'
5578 5' -52.3 NC_001806.1 + 3189 0.66 0.967973
Target:  5'- -cGGCGGCCucGCUGcCGCCGGcCa-- -3'
miRNA:   3'- aaUUGUUGGu-CGACaGCGGCCuGaag -5'
5578 5' -52.3 NC_001806.1 + 118107 0.67 0.957322
Target:  5'- -gAACgGGCCGGUcGUCGCCGGuCUc- -3'
miRNA:   3'- aaUUG-UUGGUCGaCAGCGGCCuGAag -5'
5578 5' -52.3 NC_001806.1 + 58241 0.67 0.957322
Target:  5'- ---cCGACCuGCaGUCGCCGGAg--- -3'
miRNA:   3'- aauuGUUGGuCGaCAGCGGCCUgaag -5'
5578 5' -52.3 NC_001806.1 + 92661 0.67 0.946319
Target:  5'- --cGCAACCAGCuucccgcccggcuccUGUCGCgcgaGGACaUCg -3'
miRNA:   3'- aauUGUUGGUCG---------------ACAGCGg---CCUGaAG- -5'
5578 5' -52.3 NC_001806.1 + 98491 0.68 0.934117
Target:  5'- --cGCAACCAGCUGcacgaccugcgcuUCGCC-GACaUCg -3'
miRNA:   3'- aauUGUUGGUCGAC-------------AGCGGcCUGaAG- -5'
5578 5' -52.3 NC_001806.1 + 70664 0.68 0.929329
Target:  5'- cUGGCGGcCCAGgUGUCGCacgaGGACa-- -3'
miRNA:   3'- aAUUGUU-GGUCgACAGCGg---CCUGaag -5'
5578 5' -52.3 NC_001806.1 + 109881 0.68 0.92376
Target:  5'- gUUGGCGACCAcGCgGUCGuCUGGGCcugUCc -3'
miRNA:   3'- -AAUUGUUGGU-CGaCAGC-GGCCUGa--AG- -5'
5578 5' -52.3 NC_001806.1 + 57055 0.68 0.917931
Target:  5'- -gGGCccCCGGCUGcgUGCCGGGCUc- -3'
miRNA:   3'- aaUUGuuGGUCGACa-GCGGCCUGAag -5'
5578 5' -52.3 NC_001806.1 + 95708 0.69 0.911843
Target:  5'- -cGACAACC-GCUcggCGCCGGGCg-- -3'
miRNA:   3'- aaUUGUUGGuCGAca-GCGGCCUGaag -5'
5578 5' -52.3 NC_001806.1 + 149993 0.69 0.884939
Target:  5'- --uGCGACCAGaCUGUCggGCCaGGGCUa- -3'
miRNA:   3'- aauUGUUGGUC-GACAG--CGG-CCUGAag -5'
5578 5' -52.3 NC_001806.1 + 100371 0.7 0.854147
Target:  5'- --cACAGgUAGCUcccGUCGCCGGGCggCg -3'
miRNA:   3'- aauUGUUgGUCGA---CAGCGGCCUGaaG- -5'
5578 5' -52.3 NC_001806.1 + 103157 0.7 0.83741
Target:  5'- -cGGCAGCC-GCUGUgCGCUGGGCc-- -3'
miRNA:   3'- aaUUGUUGGuCGACA-GCGGCCUGaag -5'
5578 5' -52.3 NC_001806.1 + 74602 0.7 0.83741
Target:  5'- -cGACGGCgGGCUGUCGCCaGAg--- -3'
miRNA:   3'- aaUUGUUGgUCGACAGCGGcCUgaag -5'
5578 5' -52.3 NC_001806.1 + 53865 0.7 0.83741
Target:  5'- -cGGCGGCCAGCUGUuuggcagcCGCgCGGGgaUCa -3'
miRNA:   3'- aaUUGUUGGUCGACA--------GCG-GCCUgaAG- -5'
5578 5' -52.3 NC_001806.1 + 4893 0.71 0.801568
Target:  5'- -cAGCAgaGCCAGCUGUCGCggCGaGACggCg -3'
miRNA:   3'- aaUUGU--UGGUCGACAGCG--GC-CUGaaG- -5'
5578 5' -52.3 NC_001806.1 + 61434 0.72 0.782607
Target:  5'- aUGGCcGCCAGCgc-CGCCGGGCUc- -3'
miRNA:   3'- aAUUGuUGGUCGacaGCGGCCUGAag -5'
5578 5' -52.3 NC_001806.1 + 24011 0.73 0.712154
Target:  5'- cUGGcCAACCGGCUGUgcggGCCGGACa-- -3'
miRNA:   3'- aAUU-GUUGGUCGACAg---CGGCCUGaag -5'
5578 5' -52.3 NC_001806.1 + 24569 0.79 0.397209
Target:  5'- aUGGCGcCCGGCg--CGCCGGACUUCu -3'
miRNA:   3'- aAUUGUuGGUCGacaGCGGCCUGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.