miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5579 3' -63.8 NC_001806.1 + 102816 0.66 0.561231
Target:  5'- gGUCCCGaacaCCAcccCCGAcgagCCGGUCgccCCGCGg -3'
miRNA:   3'- -CAGGGC----GGU---GGCUa---GGCCGGa--GGCGC- -5'
5579 3' -63.8 NC_001806.1 + 71203 0.66 0.561231
Target:  5'- cUCCUGCggguCACCGAcggcguguUUCGcGCUUCCGCGu -3'
miRNA:   3'- cAGGGCG----GUGGCU--------AGGC-CGGAGGCGC- -5'
5579 3' -63.8 NC_001806.1 + 24318 0.66 0.561231
Target:  5'- -aCCugCGCCGCaCGGUgCUGGCCUcgggCCGCGu -3'
miRNA:   3'- caGG--GCGGUG-GCUA-GGCCGGA----GGCGC- -5'
5579 3' -63.8 NC_001806.1 + 103030 0.66 0.551768
Target:  5'- --gCCGCCGCCGucUCCaGcGCCUCCaggGCGc -3'
miRNA:   3'- cagGGCGGUGGCu-AGG-C-CGGAGG---CGC- -5'
5579 3' -63.8 NC_001806.1 + 100102 0.66 0.551768
Target:  5'- cUCCCGCgGCCGGcugaCCGcccGCCuggcggUCCGCGg -3'
miRNA:   3'- cAGGGCGgUGGCUa---GGC---CGG------AGGCGC- -5'
5579 3' -63.8 NC_001806.1 + 20164 0.66 0.551768
Target:  5'- -cCCCGCCGcCCGggCCcGCCcCCGgGg -3'
miRNA:   3'- caGGGCGGU-GGCuaGGcCGGaGGCgC- -5'
5579 3' -63.8 NC_001806.1 + 144122 0.67 0.542354
Target:  5'- -cCCUGCCuuccACCc-UCCGGCCccCCGCGa -3'
miRNA:   3'- caGGGCGG----UGGcuAGGCCGGa-GGCGC- -5'
5579 3' -63.8 NC_001806.1 + 119459 0.67 0.542354
Target:  5'- -aCCCGCCGCCac-CCGGuCCgagCGCGg -3'
miRNA:   3'- caGGGCGGUGGcuaGGCC-GGag-GCGC- -5'
5579 3' -63.8 NC_001806.1 + 113441 0.67 0.542354
Target:  5'- -cCCCGCCACC-AUCgCcGCCgUUCGCGg -3'
miRNA:   3'- caGGGCGGUGGcUAG-GcCGG-AGGCGC- -5'
5579 3' -63.8 NC_001806.1 + 60038 0.67 0.532995
Target:  5'- -gUCCGCCGCgcccuCGAagCCGGCC-CUGCGu -3'
miRNA:   3'- caGGGCGGUG-----GCUa-GGCCGGaGGCGC- -5'
5579 3' -63.8 NC_001806.1 + 37863 0.67 0.532995
Target:  5'- -cCCCGUguCCG--CUGGCCUCCGgGu -3'
miRNA:   3'- caGGGCGguGGCuaGGCCGGAGGCgC- -5'
5579 3' -63.8 NC_001806.1 + 23301 0.67 0.532995
Target:  5'- aGUCCCGgC-CCGGcCCGGCCgCC-CGg -3'
miRNA:   3'- -CAGGGCgGuGGCUaGGCCGGaGGcGC- -5'
5579 3' -63.8 NC_001806.1 + 5698 0.67 0.527406
Target:  5'- -cCCCGCauggcaucucauuacCGcCCGAUCCGGCgguUUCCGCu -3'
miRNA:   3'- caGGGCG---------------GU-GGCUAGGCCG---GAGGCGc -5'
5579 3' -63.8 NC_001806.1 + 30281 0.67 0.523693
Target:  5'- -cCCCgGCCcCCGGggcggagCCGGCCgcccgccCCGCGg -3'
miRNA:   3'- caGGG-CGGuGGCUa------GGCCGGa------GGCGC- -5'
5579 3' -63.8 NC_001806.1 + 150856 0.67 0.523693
Target:  5'- --aCCGaguuCGCCGggCCGG-CUCCGCGg -3'
miRNA:   3'- cagGGCg---GUGGCuaGGCCgGAGGCGC- -5'
5579 3' -63.8 NC_001806.1 + 2210 0.67 0.523693
Target:  5'- -gCCCGCCcaggcgGCCGuGUCCGGC--CCGCa -3'
miRNA:   3'- caGGGCGG------UGGC-UAGGCCGgaGGCGc -5'
5579 3' -63.8 NC_001806.1 + 47541 0.67 0.523693
Target:  5'- uUCCCuaCGCU--UCCGGCCacCCGCGa -3'
miRNA:   3'- cAGGGcgGUGGcuAGGCCGGa-GGCGC- -5'
5579 3' -63.8 NC_001806.1 + 85191 0.67 0.522766
Target:  5'- uUCgCCGCCACCaGccgcgaggcccuaAUCCuGGCCUUCGUGc -3'
miRNA:   3'- cAG-GGCGGUGG-C-------------UAGG-CCGGAGGCGC- -5'
5579 3' -63.8 NC_001806.1 + 74286 0.67 0.522766
Target:  5'- -cCCCGCCcCCGAUCgcgaccagccccaCGGCCaUCCuguuGCGg -3'
miRNA:   3'- caGGGCGGuGGCUAG-------------GCCGG-AGG----CGC- -5'
5579 3' -63.8 NC_001806.1 + 64761 0.67 0.514454
Target:  5'- cUCCCagaaaGCgCGCCa---CGGCCUCCGCGu -3'
miRNA:   3'- cAGGG-----CG-GUGGcuagGCCGGAGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.