miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5579 5' -57.3 NC_001806.1 + 25516 0.68 0.777081
Target:  5'- aGCGCGGGACgcgCCgGGgagGGCuGGGg -3'
miRNA:   3'- gCGCGCCCUGauaGGgCUa--CCG-CUUa -5'
5579 5' -57.3 NC_001806.1 + 10411 0.68 0.777081
Target:  5'- aGC-CGGGGg-GUCCCGcUGGCGGGa -3'
miRNA:   3'- gCGcGCCCUgaUAGGGCuACCGCUUa -5'
5579 5' -57.3 NC_001806.1 + 113823 0.68 0.76778
Target:  5'- uCGUGUGGGACUGUgacgcCCUGAUgcGGCGc-- -3'
miRNA:   3'- -GCGCGCCCUGAUA-----GGGCUA--CCGCuua -5'
5579 5' -57.3 NC_001806.1 + 52734 0.68 0.76778
Target:  5'- gGCGCGGGGCccccgcuUCCgGAUG-CGAAc -3'
miRNA:   3'- gCGCGCCCUGau-----AGGgCUACcGCUUa -5'
5579 5' -57.3 NC_001806.1 + 147743 0.68 0.758361
Target:  5'- cCGCGCGGGggcGCgcggGUCCCGAc-GCGGc- -3'
miRNA:   3'- -GCGCGCCC---UGa---UAGGGCUacCGCUua -5'
5579 5' -57.3 NC_001806.1 + 55540 0.68 0.739201
Target:  5'- --aGUGGGGCgg-CCCGAcuUGGCGGGg -3'
miRNA:   3'- gcgCGCCCUGauaGGGCU--ACCGCUUa -5'
5579 5' -57.3 NC_001806.1 + 147694 0.68 0.739201
Target:  5'- gGCGCgGGGGCgggcCCCGGaGGCGGc- -3'
miRNA:   3'- gCGCG-CCCUGaua-GGGCUaCCGCUua -5'
5579 5' -57.3 NC_001806.1 + 41624 0.68 0.739201
Target:  5'- gGUGUGGGgcccuGCUGUUCCG-UGGCGGc- -3'
miRNA:   3'- gCGCGCCC-----UGAUAGGGCuACCGCUua -5'
5579 5' -57.3 NC_001806.1 + 48886 0.68 0.729479
Target:  5'- aGCGCGGGACcguuUCCCauuUGGcCGGGg -3'
miRNA:   3'- gCGCGCCCUGau--AGGGcu-ACC-GCUUa -5'
5579 5' -57.3 NC_001806.1 + 55071 0.69 0.719674
Target:  5'- cCGCGUGGGGCUggaggGUCagagaCGGggGGCGGAa -3'
miRNA:   3'- -GCGCGCCCUGA-----UAGg----GCUa-CCGCUUa -5'
5579 5' -57.3 NC_001806.1 + 37796 0.69 0.709795
Target:  5'- gGCGCGGGGg---UCCGcgGGCGGGg -3'
miRNA:   3'- gCGCGCCCUgauaGGGCuaCCGCUUa -5'
5579 5' -57.3 NC_001806.1 + 45302 0.69 0.689852
Target:  5'- cCGCGCGGGGagccgCCCGGcgaggagGGCGGGc -3'
miRNA:   3'- -GCGCGCCCUgaua-GGGCUa------CCGCUUa -5'
5579 5' -57.3 NC_001806.1 + 34256 0.69 0.668709
Target:  5'- uGCGUguggcugGGGGCUuauaugugggGUCCCGggGGCGGGa -3'
miRNA:   3'- gCGCG-------CCCUGA----------UAGGGCuaCCGCUUa -5'
5579 5' -57.3 NC_001806.1 + 143278 0.7 0.659603
Target:  5'- uGCGCGGGAg-GUgUCGGUGGUGGu- -3'
miRNA:   3'- gCGCGCCCUgaUAgGGCUACCGCUua -5'
5579 5' -57.3 NC_001806.1 + 133688 0.7 0.619004
Target:  5'- uCGUGCGuGuCUGUCCCGGaGGCGGGg -3'
miRNA:   3'- -GCGCGCcCuGAUAGGGCUaCCGCUUa -5'
5579 5' -57.3 NC_001806.1 + 148188 0.71 0.588629
Target:  5'- gGCGCGGGGCg--UCCGGcggggGGCGGGc -3'
miRNA:   3'- gCGCGCCCUGauaGGGCUa----CCGCUUa -5'
5579 5' -57.3 NC_001806.1 + 23979 0.71 0.558532
Target:  5'- aGCGCGgcGGGCUGUCCUGccugcUGGCGGc- -3'
miRNA:   3'- gCGCGC--CCUGAUAGGGCu----ACCGCUua -5'
5579 5' -57.3 NC_001806.1 + 140729 0.71 0.555544
Target:  5'- gGCGCGGGGCguuUCCCGAaaacgaggaggucuUGGUGc-- -3'
miRNA:   3'- gCGCGCCCUGau-AGGGCU--------------ACCGCuua -5'
5579 5' -57.3 NC_001806.1 + 49482 0.74 0.435078
Target:  5'- aCGCGCGGG-CUAUUuuGG-GGCGggUc -3'
miRNA:   3'- -GCGCGCCCuGAUAGggCUaCCGCuuA- -5'
5579 5' -57.3 NC_001806.1 + 123854 1.06 0.003449
Target:  5'- uCGCGCGGGACUAUCCCGAUGGCGAAUg -3'
miRNA:   3'- -GCGCGCCCUGAUAGGGCUACCGCUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.