miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5580 3' -58.1 NC_001806.1 + 95074 0.74 0.377964
Target:  5'- -gGCGGCgGGCGGAGcAUUUCGAUCGCg -3'
miRNA:   3'- agCGCCG-CCGCUUCaUGGGGCUAGUG- -5'
5580 3' -58.1 NC_001806.1 + 126135 0.75 0.354301
Target:  5'- aCGaCGGCGGCGAGGccgGCgCCGA-CACg -3'
miRNA:   3'- aGC-GCCGCCGCUUCa--UGgGGCUaGUG- -5'
5580 3' -58.1 NC_001806.1 + 21868 0.75 0.346649
Target:  5'- -gGCGGCGGCGAGG-ACCCC---CGCg -3'
miRNA:   3'- agCGCCGCCGCUUCaUGGGGcuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 41826 0.77 0.258046
Target:  5'- aCGCGGgGGCGGGcGUcaggGCCCCGggCGCg -3'
miRNA:   3'- aGCGCCgCCGCUU-CA----UGGGGCuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 151450 0.78 0.234778
Target:  5'- -gGCGGCGGCGggGcgGCCgCGggCGCg -3'
miRNA:   3'- agCGCCGCCGCuuCa-UGGgGCuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 112428 0.72 0.500369
Target:  5'- gCGCgGGCGGCcggucgacGggGUgcucgucaccaccGCCCCGAUCAa -3'
miRNA:   3'- aGCG-CCGCCG--------CuuCA-------------UGGGGCUAGUg -5'
5580 3' -58.1 NC_001806.1 + 83050 0.72 0.501317
Target:  5'- gUCGCGGUGuGCGAagAGUcCCCCGGcaGCa -3'
miRNA:   3'- -AGCGCCGC-CGCU--UCAuGGGGCUagUG- -5'
5580 3' -58.1 NC_001806.1 + 96453 0.69 0.659363
Target:  5'- gCGuCGGCGGCuccGAGUucCCCCGG-CACg -3'
miRNA:   3'- aGC-GCCGCCGc--UUCAu-GGGGCUaGUG- -5'
5580 3' -58.1 NC_001806.1 + 4907 0.69 0.649338
Target:  5'- gUCGCGGCGaGaCGgcGU-CCCCGGcguccUCGCc -3'
miRNA:   3'- -AGCGCCGC-C-GCuuCAuGGGGCU-----AGUG- -5'
5580 3' -58.1 NC_001806.1 + 148115 0.69 0.645324
Target:  5'- cCGCGGcCGGCuGggGggcugcgugagacGCCCCGcccGUCACg -3'
miRNA:   3'- aGCGCC-GCCG-CuuCa------------UGGGGC---UAGUG- -5'
5580 3' -58.1 NC_001806.1 + 51794 0.7 0.629256
Target:  5'- cCGUGGCGGCcAAGUACgCCGc-CACc -3'
miRNA:   3'- aGCGCCGCCGcUUCAUGgGGCuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 134979 0.7 0.628252
Target:  5'- gUCGCGGCGGCcaucccGGUgcccgaugcccccGCCCUGGUCcgGCg -3'
miRNA:   3'- -AGCGCCGCCGcu----UCA-------------UGGGGCUAG--UG- -5'
5580 3' -58.1 NC_001806.1 + 29930 0.7 0.619215
Target:  5'- -aGCaGCGGCGggGcgGCuCCCGccaGUCGCg -3'
miRNA:   3'- agCGcCGCCGCuuCa-UG-GGGC---UAGUG- -5'
5580 3' -58.1 NC_001806.1 + 42738 0.7 0.589176
Target:  5'- -gGUGGCGGCGAuGUGgUCCGGUUguaGCg -3'
miRNA:   3'- agCGCCGCCGCUuCAUgGGGCUAG---UG- -5'
5580 3' -58.1 NC_001806.1 + 3130 0.71 0.579214
Target:  5'- cCGCGGCaGcGCGggGcccaggGCCCCGGcgaccaggcUCACg -3'
miRNA:   3'- aGCGCCG-C-CGCuuCa-----UGGGGCU---------AGUG- -5'
5580 3' -58.1 NC_001806.1 + 100396 0.71 0.559405
Target:  5'- gCGCGGgGGcCGggGUG-CCCGAUguCg -3'
miRNA:   3'- aGCGCCgCC-GCuuCAUgGGGCUAguG- -5'
5580 3' -58.1 NC_001806.1 + 21216 0.71 0.539791
Target:  5'- gCGCGGagacggaggagGGCGggGacgACCCCGAcCACg -3'
miRNA:   3'- aGCGCCg----------CCGCuuCa--UGGGGCUaGUG- -5'
5580 3' -58.1 NC_001806.1 + 3634 0.71 0.539791
Target:  5'- -gGCGGCGGCGAcggcGGcgACCCCcucGUCAUc -3'
miRNA:   3'- agCGCCGCCGCU----UCa-UGGGGc--UAGUG- -5'
5580 3' -58.1 NC_001806.1 + 151559 0.72 0.520414
Target:  5'- -gGgGGCGGCGggG-GCCgCGAUgGCg -3'
miRNA:   3'- agCgCCGCCGCuuCaUGGgGCUAgUG- -5'
5580 3' -58.1 NC_001806.1 + 2509 0.72 0.510828
Target:  5'- aCGCggccugGGCGGCGggGgcggGCCCgGcgCACc -3'
miRNA:   3'- aGCG------CCGCCGCuuCa---UGGGgCuaGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.