Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5580 | 5' | -58.5 | NC_001806.1 | + | 31966 | 0.66 | 0.821147 |
Target: 5'- gGGGCgggaCGGGGCGCCCaaaaggGGGUCGg -3' miRNA: 3'- -UCUGaua-GUCUCGUGGGggg---CCCAGC- -5' |
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5580 | 5' | -58.5 | NC_001806.1 | + | 17206 | 0.68 | 0.691101 |
Target: 5'- aGGGCccuuaaauuuUUAGAGCAgCCCCCGcGUCGg -3' miRNA: 3'- -UCUGau--------AGUCUCGUgGGGGGCcCAGC- -5' |
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5580 | 5' | -58.5 | NC_001806.1 | + | 151517 | 0.68 | 0.709817 |
Target: 5'- gGGACUGUgCGGuugggacGGCGCCCgugggCCCGGG-CGg -3' miRNA: 3'- -UCUGAUA-GUC-------UCGUGGG-----GGGCCCaGC- -5' |
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5580 | 5' | -58.5 | NC_001806.1 | + | 30907 | 0.67 | 0.739835 |
Target: 5'- gAGACUucCGGGGCcguCCCCgCGGG-CGg -3' miRNA: 3'- -UCUGAuaGUCUCGu--GGGGgGCCCaGC- -5' |
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5580 | 5' | -58.5 | NC_001806.1 | + | 37619 | 0.67 | 0.739835 |
Target: 5'- gGGGCUAUucgCGGcgggaaacGGCugCCCCCcaaagGGGUCGu -3' miRNA: 3'- -UCUGAUA---GUC--------UCGugGGGGG-----CCCAGC- -5' |
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5580 | 5' | -58.5 | NC_001806.1 | + | 106657 | 0.67 | 0.768985 |
Target: 5'- uAGAUcggGUCGGGGaccccgcggacgaaaACCCCCCGGGg-- -3' miRNA: 3'- -UCUGa--UAGUCUCg--------------UGGGGGGCCCagc -5' |
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5580 | 5' | -58.5 | NC_001806.1 | + | 151241 | 0.67 | 0.777249 |
Target: 5'- gGGAgggGUCAGcccCGCCCCCCGGGcCc -3' miRNA: 3'- -UCUga-UAGUCuc-GUGGGGGGCCCaGc -5' |
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5580 | 5' | -58.5 | NC_001806.1 | + | 129654 | 0.67 | 0.786311 |
Target: 5'- cAGGCUGcCcu-GCGCCCgCCCGGGcCGc -3' miRNA: 3'- -UCUGAUaGucuCGUGGG-GGGCCCaGC- -5' |
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5580 | 5' | -58.5 | NC_001806.1 | + | 21951 | 0.66 | 0.795241 |
Target: 5'- cGGGCccuUCAcggccGGGCAgCCCCggCGGGUCGa -3' miRNA: 3'- -UCUGau-AGU-----CUCGUgGGGG--GCCCAGC- -5' |
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5580 | 5' | -58.5 | NC_001806.1 | + | 107187 | 0.68 | 0.678193 |
Target: 5'- uGGGCUAUCAGcuGGCcuucgugcuggauaGCCCCUCGGcGUaCGa -3' miRNA: 3'- -UCUGAUAGUC--UCG--------------UGGGGGGCC-CA-GC- -5' |
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5580 | 5' | -58.5 | NC_001806.1 | + | 131360 | 0.69 | 0.65121 |
Target: 5'- -cGCUGUCGGAGCuCCCCaCCGaGGcCu -3' miRNA: 3'- ucUGAUAGUCUCGuGGGG-GGC-CCaGc -5' |
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5580 | 5' | -58.5 | NC_001806.1 | + | 3515 | 0.69 | 0.64118 |
Target: 5'- cGGGCggcGUCGGGGUcgucGCCCCCCGcGGgggaggCGg -3' miRNA: 3'- -UCUGa--UAGUCUCG----UGGGGGGC-CCa-----GC- -5' |
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5580 | 5' | -58.5 | NC_001806.1 | + | 135874 | 0.74 | 0.355914 |
Target: 5'- cGuCUAUCAG-GUGCCCCCCGGccucGUCGa -3' miRNA: 3'- uCuGAUAGUCuCGUGGGGGGCC----CAGC- -5' |
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5580 | 5' | -58.5 | NC_001806.1 | + | 115539 | 0.72 | 0.447832 |
Target: 5'- cGACguaCAGuuuaAGCGCCCCCCGGGgugccgCGa -3' miRNA: 3'- uCUGauaGUC----UCGUGGGGGGCCCa-----GC- -5' |
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5580 | 5' | -58.5 | NC_001806.1 | + | 124259 | 0.71 | 0.503184 |
Target: 5'- cGGCU-UCAucGCGCCCCUCGGGUUc -3' miRNA: 3'- uCUGAuAGUcuCGUGGGGGGCCCAGc -5' |
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5580 | 5' | -58.5 | NC_001806.1 | + | 74920 | 0.71 | 0.522298 |
Target: 5'- gAGGCcGUUcggGGGGCGCCCCCUGaGGUUa -3' miRNA: 3'- -UCUGaUAG---UCUCGUGGGGGGC-CCAGc -5' |
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5580 | 5' | -58.5 | NC_001806.1 | + | 23546 | 0.7 | 0.581118 |
Target: 5'- cGGCUggCGGcGGCAgCCCCCGGGg-- -3' miRNA: 3'- uCUGAuaGUC-UCGUgGGGGGCCCagc -5' |
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5580 | 5' | -58.5 | NC_001806.1 | + | 85967 | 0.7 | 0.601069 |
Target: 5'- gGGGCUu--GGAcGCGCCUCCCGGGgggUCGg -3' miRNA: 3'- -UCUGAuagUCU-CGUGGGGGGCCC---AGC- -5' |
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5580 | 5' | -58.5 | NC_001806.1 | + | 22884 | 0.7 | 0.611082 |
Target: 5'- gGGGCUGgcCGGGGCccggcccgccaGCCCCCCGcGGcCGg -3' miRNA: 3'- -UCUGAUa-GUCUCG-----------UGGGGGGC-CCaGC- -5' |
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5580 | 5' | -58.5 | NC_001806.1 | + | 148413 | 0.69 | 0.621109 |
Target: 5'- uGGGCga-CAGGGCccucaccguguGCCCCCCcaGGGUCa -3' miRNA: 3'- -UCUGauaGUCUCG-----------UGGGGGG--CCCAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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