Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5581 | 3' | -56 | NC_001806.1 | + | 96417 | 0.7 | 0.710533 |
Target: 5'- ---uGGGCGCUCuUGGGGUugaCGCUGg -3' miRNA: 3'- uuuuCCCGUGAGcAUCCCGua-GCGGC- -5' |
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5581 | 3' | -56 | NC_001806.1 | + | 147493 | 0.7 | 0.700401 |
Target: 5'- cGGGGcGGCGC-CGgagGGGGCggCGCCGc -3' miRNA: 3'- uUUUC-CCGUGaGCa--UCCCGuaGCGGC- -5' |
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5581 | 3' | -56 | NC_001806.1 | + | 146791 | 0.7 | 0.700401 |
Target: 5'- ---cGGGUACUCGgGGGGCAUCa--- -3' miRNA: 3'- uuuuCCCGUGAGCaUCCCGUAGcggc -5' |
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5581 | 3' | -56 | NC_001806.1 | + | 81654 | 0.71 | 0.638694 |
Target: 5'- cGGGAGGGCugU-GUGGGGCGaaggCGuCCGg -3' miRNA: 3'- -UUUUCCCGugAgCAUCCCGUa---GC-GGC- -5' |
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5581 | 3' | -56 | NC_001806.1 | + | 69699 | 0.73 | 0.535196 |
Target: 5'- ---cGGGCGCUCGUGGGGgaGUUugagacgGCCGa -3' miRNA: 3'- uuuuCCCGUGAGCAUCCCg-UAG-------CGGC- -5' |
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5581 | 3' | -56 | NC_001806.1 | + | 65312 | 0.73 | 0.526203 |
Target: 5'- -cAAGGGC-CUCgGUGGGGaCGUCgGCCGu -3' miRNA: 3'- uuUUCCCGuGAG-CAUCCC-GUAG-CGGC- -5' |
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5581 | 3' | -56 | NC_001806.1 | + | 112574 | 0.73 | 0.496663 |
Target: 5'- ----cGGCGCUCGUGauGGGCAagGCCGu -3' miRNA: 3'- uuuucCCGUGAGCAU--CCCGUagCGGC- -5' |
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5581 | 3' | -56 | NC_001806.1 | + | 2864 | 0.73 | 0.486982 |
Target: 5'- gAGGGGGGCGCgggCGUccgagccgGGGGCGUccgCGCCGc -3' miRNA: 3'- -UUUUCCCGUGa--GCA--------UCCCGUA---GCGGC- -5' |
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5581 | 3' | -56 | NC_001806.1 | + | 29531 | 0.74 | 0.47739 |
Target: 5'- uGGGGGGGCACaCGgugAGGGCccuGUCGCCc -3' miRNA: 3'- -UUUUCCCGUGaGCa--UCCCG---UAGCGGc -5' |
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5581 | 3' | -56 | NC_001806.1 | + | 86014 | 0.76 | 0.362424 |
Target: 5'- -cGGGGGCGCUUGgccggggAGGGCAggGCCGc -3' miRNA: 3'- uuUUCCCGUGAGCa------UCCCGUagCGGC- -5' |
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5581 | 3' | -56 | NC_001806.1 | + | 122983 | 1.06 | 0.004201 |
Target: 5'- aAAAAGGGCACUCGUAGGGCAUCGCCGc -3' miRNA: 3'- -UUUUCCCGUGAGCAUCCCGUAGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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