miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5581 5' -64.1 NC_001806.1 + 67844 0.66 0.573633
Target:  5'- gCCGCCc-CGCagaaaGUCCGCaCCCACg -3'
miRNA:   3'- gGGCGGcuGCGgag--CAGGCGcGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 60715 0.66 0.573633
Target:  5'- aCCCG-CGACGCCaCGUCauccaCGaCGCCC-Ca -3'
miRNA:   3'- -GGGCgGCUGCGGaGCAG-----GC-GCGGGuG- -5'
5581 5' -64.1 NC_001806.1 + 107399 0.66 0.571742
Target:  5'- gCCCGCCGGagccuucugauaGCCUCGgcccuguguacgUCCGaCGUcgCCGCa -3'
miRNA:   3'- -GGGCGGCUg-----------CGGAGC------------AGGC-GCG--GGUG- -5'
5581 5' -64.1 NC_001806.1 + 47493 0.66 0.56419
Target:  5'- gUCC-CCGaACGCacccaaaUCGacaUUCGCGCCCACg -3'
miRNA:   3'- -GGGcGGC-UGCGg------AGC---AGGCGCGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 96473 0.66 0.56419
Target:  5'- cCCCGgC-ACGCCUgGggUCGCGgCCGCg -3'
miRNA:   3'- -GGGCgGcUGCGGAgCa-GGCGCgGGUG- -5'
5581 5' -64.1 NC_001806.1 + 125861 0.66 0.56419
Target:  5'- gCCGCgGACGCCg---UgGCGCCC-Cg -3'
miRNA:   3'- gGGCGgCUGCGGagcaGgCGCGGGuG- -5'
5581 5' -64.1 NC_001806.1 + 88630 0.66 0.56419
Target:  5'- gUCCGCggaGAUGCCgCGgaacgaCGCGCCCGg -3'
miRNA:   3'- -GGGCGg--CUGCGGaGCag----GCGCGGGUg -5'
5581 5' -64.1 NC_001806.1 + 147284 0.66 0.554788
Target:  5'- gCCGCCGAggaCGUCagGggggucCCGgGCCCACc -3'
miRNA:   3'- gGGCGGCU---GCGGagCa-----GGCgCGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 21992 0.66 0.554788
Target:  5'- -aCGCCGACGCgaCcUCCGgCGCCUucuACg -3'
miRNA:   3'- ggGCGGCUGCGgaGcAGGC-GCGGG---UG- -5'
5581 5' -64.1 NC_001806.1 + 30255 0.66 0.554788
Target:  5'- gCCGCCuccGGgGCC-CGgcccCCGCGCCC-Cg -3'
miRNA:   3'- gGGCGG---CUgCGGaGCa---GGCGCGGGuG- -5'
5581 5' -64.1 NC_001806.1 + 68157 0.66 0.554788
Target:  5'- aCCCGCCGGucCGcCCUCGgacggaCCuaugcaGCGCCUAUu -3'
miRNA:   3'- -GGGCGGCU--GC-GGAGCa-----GG------CGCGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 65682 0.67 0.545433
Target:  5'- gCCGCCGGCcuCCU-GUCCcccaaccgGgGCCCGCg -3'
miRNA:   3'- gGGCGGCUGc-GGAgCAGG--------CgCGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 136035 0.67 0.545433
Target:  5'- aCCCGCgCGGCaccgGCCacc-CCGCGCUCGCu -3'
miRNA:   3'- -GGGCG-GCUG----CGGagcaGGCGCGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 24068 0.67 0.545433
Target:  5'- gCCC-CCGACGUgUCGgcgCUGgGCgCACa -3'
miRNA:   3'- -GGGcGGCUGCGgAGCa--GGCgCGgGUG- -5'
5581 5' -64.1 NC_001806.1 + 83224 0.67 0.545433
Target:  5'- gCCGCCGACGUggUcaCCGCccccucaaggGCCCGCg -3'
miRNA:   3'- gGGCGGCUGCGgaGcaGGCG----------CGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 37405 0.67 0.545433
Target:  5'- aCCaCGCCaGCGUCUCGUCgGCggagGCCaGCg -3'
miRNA:   3'- -GG-GCGGcUGCGGAGCAGgCG----CGGgUG- -5'
5581 5' -64.1 NC_001806.1 + 5026 0.67 0.545433
Target:  5'- cCCCGCCcu--CCUCcgucUCCGCGcCCCACc -3'
miRNA:   3'- -GGGCGGcugcGGAGc---AGGCGC-GGGUG- -5'
5581 5' -64.1 NC_001806.1 + 21900 0.67 0.545433
Target:  5'- gCCGCauCGAgCGCCg---CCGgGCCCGCg -3'
miRNA:   3'- gGGCG--GCU-GCGGagcaGGCgCGGGUG- -5'
5581 5' -64.1 NC_001806.1 + 110192 0.67 0.536129
Target:  5'- -aCGCgGACucguCCUCGUgCGUGCCgCACg -3'
miRNA:   3'- ggGCGgCUGc---GGAGCAgGCGCGG-GUG- -5'
5581 5' -64.1 NC_001806.1 + 23126 0.67 0.536129
Target:  5'- gCUGCCGcgggacccGCGCCUgcCGagcUCCGCGgCCGCc -3'
miRNA:   3'- gGGCGGC--------UGCGGA--GC---AGGCGCgGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.