miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5582 3' -53.5 NC_001806.1 + 91014 0.66 0.951416
Target:  5'- -----cGACGGCGGCgGCaaggGCGCgGCg -3'
miRNA:   3'- gauaauUUGUCGUCGgCGg---CGCGgUG- -5'
5582 3' -53.5 NC_001806.1 + 111249 0.66 0.947076
Target:  5'- ----cGGACAGCuuuGCCGCCucUGCCAa -3'
miRNA:   3'- gauaaUUUGUCGu--CGGCGGc-GCGGUg -5'
5582 3' -53.5 NC_001806.1 + 108534 0.66 0.947076
Target:  5'- -------cCGGCGGCCcgcgugcggcugGCCGCGCC-Cg -3'
miRNA:   3'- gauaauuuGUCGUCGG------------CGGCGCGGuG- -5'
5582 3' -53.5 NC_001806.1 + 50723 0.66 0.942487
Target:  5'- ------uGCAGCGGCUGCUGgGCUuuGCc -3'
miRNA:   3'- gauaauuUGUCGUCGGCGGCgCGG--UG- -5'
5582 3' -53.5 NC_001806.1 + 41200 0.66 0.942487
Target:  5'- ---cUGAACcGCAGCCagagccCCGCGCCu- -3'
miRNA:   3'- gauaAUUUGuCGUCGGc-----GGCGCGGug -5'
5582 3' -53.5 NC_001806.1 + 90834 0.66 0.942487
Target:  5'- cCUGUUcgAGGCGGUcgugggacccGCCGCCGUGgCACu -3'
miRNA:   3'- -GAUAA--UUUGUCGu---------CGGCGGCGCgGUG- -5'
5582 3' -53.5 NC_001806.1 + 77961 0.66 0.942487
Target:  5'- ------cGCGGCGGCC-CCGgggcCGCCGCu -3'
miRNA:   3'- gauaauuUGUCGUCGGcGGC----GCGGUG- -5'
5582 3' -53.5 NC_001806.1 + 95252 0.66 0.942487
Target:  5'- ----cGAACAGUgcgacgaggAGgCGCUGCGUCGCg -3'
miRNA:   3'- gauaaUUUGUCG---------UCgGCGGCGCGGUG- -5'
5582 3' -53.5 NC_001806.1 + 2786 0.67 0.937648
Target:  5'- ------cGCGGCGGcCCGggGCGCCGCg -3'
miRNA:   3'- gauaauuUGUCGUC-GGCggCGCGGUG- -5'
5582 3' -53.5 NC_001806.1 + 91169 0.67 0.937648
Target:  5'- ----aGGACA-CGGCCGCggccCGCGCCAa -3'
miRNA:   3'- gauaaUUUGUcGUCGGCG----GCGCGGUg -5'
5582 3' -53.5 NC_001806.1 + 74602 0.67 0.937648
Target:  5'- -----cGACGGCgGGCUGUCGCcagagGCCACg -3'
miRNA:   3'- gauaauUUGUCG-UCGGCGGCG-----CGGUG- -5'
5582 3' -53.5 NC_001806.1 + 69248 0.67 0.937648
Target:  5'- ----gGAGCAGCccuCCGCCGgCGCCcaGCa -3'
miRNA:   3'- gauaaUUUGUCGuc-GGCGGC-GCGG--UG- -5'
5582 3' -53.5 NC_001806.1 + 30738 0.67 0.937648
Target:  5'- ------cGCGGgGGCCGCCucuucCGCCGCc -3'
miRNA:   3'- gauaauuUGUCgUCGGCGGc----GCGGUG- -5'
5582 3' -53.5 NC_001806.1 + 132396 0.67 0.937648
Target:  5'- ------cACGGguGCUGCUGCcCCGCg -3'
miRNA:   3'- gauaauuUGUCguCGGCGGCGcGGUG- -5'
5582 3' -53.5 NC_001806.1 + 30930 0.67 0.932555
Target:  5'- --------gGGCGGCCuaCGCGCUACc -3'
miRNA:   3'- gauaauuugUCGUCGGcgGCGCGGUG- -5'
5582 3' -53.5 NC_001806.1 + 71033 0.67 0.932555
Target:  5'- ----aAAGCcccGCGGCCGaCCGCGUCGu -3'
miRNA:   3'- gauaaUUUGu--CGUCGGC-GGCGCGGUg -5'
5582 3' -53.5 NC_001806.1 + 75174 0.67 0.932555
Target:  5'- -----cGGCAGC-GCCGCCGuCGCaACg -3'
miRNA:   3'- gauaauUUGUCGuCGGCGGC-GCGgUG- -5'
5582 3' -53.5 NC_001806.1 + 21886 0.67 0.932032
Target:  5'- ------cGCGGCcuccgcgGGCCGCaucgaGCGCCGCc -3'
miRNA:   3'- gauaauuUGUCG-------UCGGCGg----CGCGGUG- -5'
5582 3' -53.5 NC_001806.1 + 112234 0.67 0.927208
Target:  5'- ---cUGGACAaCGGCCGCCuG-GCCACc -3'
miRNA:   3'- gauaAUUUGUcGUCGGCGG-CgCGGUG- -5'
5582 3' -53.5 NC_001806.1 + 130797 0.67 0.927208
Target:  5'- gCUGUUGugccuguGCAGCaccauGGCCG-CGCGCCuGCa -3'
miRNA:   3'- -GAUAAUu------UGUCG-----UCGGCgGCGCGG-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.