miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5582 5' -59.2 NC_001806.1 + 34014 0.66 0.770492
Target:  5'- uGGGCGG-GGGUGCUCGUcgaucgaccgggcucAGUGGgggCGUg -3'
miRNA:   3'- -CUCGCCgCUCACGAGCG---------------UCGUCa--GCA- -5'
5582 5' -59.2 NC_001806.1 + 108740 0.66 0.764895
Target:  5'- gGGGaCGGCGAGacguUGCgauucuauaaagCGCAGCAGagCGUg -3'
miRNA:   3'- -CUC-GCCGCUC----ACGa-----------GCGUCGUCa-GCA- -5'
5582 5' -59.2 NC_001806.1 + 56733 0.66 0.760198
Target:  5'- gGGGCGGCGGGaaagagacucgccUGCggugaugacacagaCGCGGCGGUgGUc -3'
miRNA:   3'- -CUCGCCGCUC-------------ACGa-------------GCGUCGUCAgCA- -5'
5582 5' -59.2 NC_001806.1 + 86068 0.66 0.757367
Target:  5'- gGGGCGGCGGcGUcuaGCUCGCGGaGGgCGg -3'
miRNA:   3'- -CUCGCCGCU-CA---CGAGCGUCgUCaGCa -5'
5582 5' -59.2 NC_001806.1 + 44173 0.66 0.757367
Target:  5'- gGAGCGGCGGGUuccuggGUUCG--GCGGUUGa -3'
miRNA:   3'- -CUCGCCGCUCA------CGAGCguCGUCAGCa -5'
5582 5' -59.2 NC_001806.1 + 103802 0.66 0.747861
Target:  5'- cGGGCGGCGcc-GC-CGCGGCGG-CGa -3'
miRNA:   3'- -CUCGCCGCucaCGaGCGUCGUCaGCa -5'
5582 5' -59.2 NC_001806.1 + 123129 0.66 0.738254
Target:  5'- cGGGUGGCGGG---UCGCGGCGG-CGa -3'
miRNA:   3'- -CUCGCCGCUCacgAGCGUCGUCaGCa -5'
5582 5' -59.2 NC_001806.1 + 85379 0.66 0.728558
Target:  5'- aGGCGGgGcGUGCgaccCGCGGCuGUUGUu -3'
miRNA:   3'- cUCGCCgCuCACGa---GCGUCGuCAGCA- -5'
5582 5' -59.2 NC_001806.1 + 151560 0.67 0.689047
Target:  5'- gGGGCGGCGGGggccGCgaugGCGGCGG-CGg -3'
miRNA:   3'- -CUCGCCGCUCa---CGag--CGUCGUCaGCa -5'
5582 5' -59.2 NC_001806.1 + 2517 0.67 0.680035
Target:  5'- uGGGCGGCGGGgGCgggcccggcgcaccgCGCGGCGaUCGa -3'
miRNA:   3'- -CUCGCCGCUCaCGa--------------GCGUCGUcAGCa -5'
5582 5' -59.2 NC_001806.1 + 48919 0.67 0.679032
Target:  5'- gGGGCGGCGGGUaGCcuUCGCGGgAGauacugCGUu -3'
miRNA:   3'- -CUCGCCGCUCA-CG--AGCGUCgUCa-----GCA- -5'
5582 5' -59.2 NC_001806.1 + 29932 0.68 0.60833
Target:  5'- cAGCGGCGGGgcgGCUCcCGcCAGUCGc -3'
miRNA:   3'- cUCGCCGCUCa--CGAGcGUcGUCAGCa -5'
5582 5' -59.2 NC_001806.1 + 24856 0.69 0.558186
Target:  5'- cAGCGGCaccGUGCUgGCGGCGG-CGg -3'
miRNA:   3'- cUCGCCGcu-CACGAgCGUCGUCaGCa -5'
5582 5' -59.2 NC_001806.1 + 4829 0.73 0.375728
Target:  5'- gGGGCGGCGAG-GC-CGCGG-GGUCGg -3'
miRNA:   3'- -CUCGCCGCUCaCGaGCGUCgUCAGCa -5'
5582 5' -59.2 NC_001806.1 + 89520 0.73 0.367694
Target:  5'- cGGGCGGCGAGcUGCUgCGCGGCGcccCGg -3'
miRNA:   3'- -CUCGCCGCUC-ACGA-GCGUCGUca-GCa -5'
5582 5' -59.2 NC_001806.1 + 25919 0.73 0.359779
Target:  5'- cGGGCGGCGuGcGCgcgCGCGGCGGgCGUg -3'
miRNA:   3'- -CUCGCCGCuCaCGa--GCGUCGUCaGCA- -5'
5582 5' -59.2 NC_001806.1 + 122894 1.07 0.001672
Target:  5'- aGAGCGGCGAGUGCUCGCAGCAGUCGUg -3'
miRNA:   3'- -CUCGCCGCUCACGAGCGUCGUCAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.