miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5583 5' -57.2 NC_001806.1 + 17138 0.66 0.865513
Target:  5'- cCUCCccCGGACGCCuccGCUgcCGGUCGCUc -3'
miRNA:   3'- -GAGGa-GUUUGUGGc--CGA--GCCAGCGGa -5'
5583 5' -57.2 NC_001806.1 + 57886 0.66 0.849457
Target:  5'- aUCCUCGccccccgAGCGCCcccGCUUGGUCGUg- -3'
miRNA:   3'- gAGGAGU-------UUGUGGc--CGAGCCAGCGga -5'
5583 5' -57.2 NC_001806.1 + 73458 0.66 0.842311
Target:  5'- -gCCggGGugGCCGGCcCGGcCGCCg -3'
miRNA:   3'- gaGGagUUugUGGCCGaGCCaGCGGa -5'
5583 5' -57.2 NC_001806.1 + 100799 0.67 0.834193
Target:  5'- -cCCUCGcgaGACGCCGGCgacaGGUgGCg- -3'
miRNA:   3'- gaGGAGU---UUGUGGCCGag--CCAgCGga -5'
5583 5' -57.2 NC_001806.1 + 28516 0.67 0.817425
Target:  5'- --aCUCAGACGCagGGCccggGGUCGCCg -3'
miRNA:   3'- gagGAGUUUGUGg-CCGag--CCAGCGGa -5'
5583 5' -57.2 NC_001806.1 + 46422 0.67 0.808789
Target:  5'- gUCUUCu-GCGCCGcGgUCGGgCGCCUg -3'
miRNA:   3'- gAGGAGuuUGUGGC-CgAGCCaGCGGA- -5'
5583 5' -57.2 NC_001806.1 + 85946 0.67 0.799997
Target:  5'- --gCUCGGACACCagcagcuugcggGGCUUGGacgCGCCUc -3'
miRNA:   3'- gagGAGUUUGUGG------------CCGAGCCa--GCGGA- -5'
5583 5' -57.2 NC_001806.1 + 4932 0.68 0.791055
Target:  5'- gUCCUC----GCCGGCgUCGGUgccCGCCg -3'
miRNA:   3'- gAGGAGuuugUGGCCG-AGCCA---GCGGa -5'
5583 5' -57.2 NC_001806.1 + 102562 0.68 0.781973
Target:  5'- aUCCcCGAACgugACCGGagcgCGGUCGCUa -3'
miRNA:   3'- gAGGaGUUUG---UGGCCga--GCCAGCGGa -5'
5583 5' -57.2 NC_001806.1 + 1664 0.68 0.744414
Target:  5'- cCUCCUCGcagAAguCCGGCgcgcCGGgCGCCa -3'
miRNA:   3'- -GAGGAGU---UUguGGCCGa---GCCaGCGGa -5'
5583 5' -57.2 NC_001806.1 + 124482 0.69 0.734761
Target:  5'- aUCCUCGucauGCugCGG-UCGGaCGCCg -3'
miRNA:   3'- gAGGAGUu---UGugGCCgAGCCaGCGGa -5'
5583 5' -57.2 NC_001806.1 + 41037 0.69 0.734761
Target:  5'- aCUCCUCAu-CACCGGCgUC-GUCGUa- -3'
miRNA:   3'- -GAGGAGUuuGUGGCCG-AGcCAGCGga -5'
5583 5' -57.2 NC_001806.1 + 87391 0.69 0.705313
Target:  5'- cCUCC-CGGGCugCGGC-CGGaCGCUUg -3'
miRNA:   3'- -GAGGaGUUUGugGCCGaGCCaGCGGA- -5'
5583 5' -57.2 NC_001806.1 + 73089 0.69 0.682354
Target:  5'- gUCCUCGccucGGCACCccccgacccggccgGGCcgcCGGUCGCCg -3'
miRNA:   3'- gAGGAGU----UUGUGG--------------CCGa--GCCAGCGGa -5'
5583 5' -57.2 NC_001806.1 + 17722 0.7 0.66524
Target:  5'- uUUCUCGAAUAcgcccaaaaaauCCGGCUCGGgguaagauuuaUCGCCa -3'
miRNA:   3'- gAGGAGUUUGU------------GGCCGAGCC-----------AGCGGa -5'
5583 5' -57.2 NC_001806.1 + 151318 0.72 0.5643
Target:  5'- -gCCUCuGGCGCCGGCUCGGgcgggggGCUg -3'
miRNA:   3'- gaGGAGuUUGUGGCCGAGCCag-----CGGa -5'
5583 5' -57.2 NC_001806.1 + 144644 0.73 0.47709
Target:  5'- aUCCUCccccuAAGCGCCGGC-CGGcCGCUg -3'
miRNA:   3'- gAGGAG-----UUUGUGGCCGaGCCaGCGGa -5'
5583 5' -57.2 NC_001806.1 + 78420 0.74 0.449491
Target:  5'- uCUCC-CAAGCACC-GCUCuGGUCGCUc -3'
miRNA:   3'- -GAGGaGUUUGUGGcCGAG-CCAGCGGa -5'
5583 5' -57.2 NC_001806.1 + 122220 1.07 0.003264
Target:  5'- uCUCCUCAAACACCGGCUCGGUCGCCUu -3'
miRNA:   3'- -GAGGAGUUUGUGGCCGAGCCAGCGGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.