miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5584 3' -63.1 NC_001806.1 + 30140 0.67 0.509834
Target:  5'- ---aCAGGCCCCCCGCggCGcCCaUGCc -3'
miRNA:   3'- cgacGUCCGGGGGGCG--GCaGGaACGu -5'
5584 3' -63.1 NC_001806.1 + 135607 0.67 0.491289
Target:  5'- cGCUcCAGGgCCCCCGCUGU---UGCGc -3'
miRNA:   3'- -CGAcGUCCgGGGGGCGGCAggaACGU- -5'
5584 3' -63.1 NC_001806.1 + 1937 0.67 0.491289
Target:  5'- uGCggcGCAGGUCCCgCGCCG-CCggccaGCGc -3'
miRNA:   3'- -CGa--CGUCCGGGGgGCGGCaGGaa---CGU- -5'
5584 3' -63.1 NC_001806.1 + 70350 0.67 0.491289
Target:  5'- uGCUGCAGGa-CCUCGCCGagCgcGCAg -3'
miRNA:   3'- -CGACGUCCggGGGGCGGCagGaaCGU- -5'
5584 3' -63.1 NC_001806.1 + 1450 0.67 0.482135
Target:  5'- gGCgGCAGGgCCCCCggGCCGUCgUcGUc -3'
miRNA:   3'- -CGaCGUCCgGGGGG--CGGCAGgAaCGu -5'
5584 3' -63.1 NC_001806.1 + 49425 0.67 0.482135
Target:  5'- -aUG-AGGUUCCCCGCgGUCCUccGCAg -3'
miRNA:   3'- cgACgUCCGGGGGGCGgCAGGAa-CGU- -5'
5584 3' -63.1 NC_001806.1 + 30049 0.68 0.472161
Target:  5'- gGCcgGaCGGGCCCccuugucaacagaCCCGCCccCCUUGCAa -3'
miRNA:   3'- -CGa-C-GUCCGGG-------------GGGCGGcaGGAACGU- -5'
5584 3' -63.1 NC_001806.1 + 79866 0.68 0.455184
Target:  5'- cGCU-CGGGCCCCaggCCGCCGgCCagGCu -3'
miRNA:   3'- -CGAcGUCCGGGG---GGCGGCaGGaaCGu -5'
5584 3' -63.1 NC_001806.1 + 133265 0.68 0.455184
Target:  5'- uGCUuaGGGCCaa-CGCCGUCCggcUGCGg -3'
miRNA:   3'- -CGAcgUCCGGgggGCGGCAGGa--ACGU- -5'
5584 3' -63.1 NC_001806.1 + 113506 0.68 0.449891
Target:  5'- uGCUGCAGGCCgCCauacacggcagcgaGCaCGUCUUcUGCGc -3'
miRNA:   3'- -CGACGUCCGGgGGg-------------CG-GCAGGA-ACGU- -5'
5584 3' -63.1 NC_001806.1 + 52734 0.68 0.446382
Target:  5'- gGC-GCGGGgCCCCCGCU-UCCggaUGCGa -3'
miRNA:   3'- -CGaCGUCCgGGGGGCGGcAGGa--ACGU- -5'
5584 3' -63.1 NC_001806.1 + 38708 0.68 0.446382
Target:  5'- --gGCGGGgCCCCCGCCccaCCUccgGCAc -3'
miRNA:   3'- cgaCGUCCgGGGGGCGGca-GGAa--CGU- -5'
5584 3' -63.1 NC_001806.1 + 45754 0.68 0.429067
Target:  5'- cCUGCAccaCCCCCGCCGUCCgaacccagGCc -3'
miRNA:   3'- cGACGUccgGGGGGCGGCAGGaa------CGu -5'
5584 3' -63.1 NC_001806.1 + 56518 0.69 0.42056
Target:  5'- aGCgGCAGGCCCgggCCCGgCGUUCcccggGCAu -3'
miRNA:   3'- -CGaCGUCCGGG---GGGCgGCAGGaa---CGU- -5'
5584 3' -63.1 NC_001806.1 + 29760 0.69 0.42056
Target:  5'- --cGCccGCCCCCCGCCGgacgCCccGCGc -3'
miRNA:   3'- cgaCGucCGGGGGGCGGCa---GGaaCGU- -5'
5584 3' -63.1 NC_001806.1 + 103789 0.69 0.403856
Target:  5'- uGCUGCAGaCCCCCgggcggCGCCG-CCgcgGCGg -3'
miRNA:   3'- -CGACGUCcGGGGG------GCGGCaGGaa-CGU- -5'
5584 3' -63.1 NC_001806.1 + 26530 0.69 0.403856
Target:  5'- cGCcGguGGgCCCCCGCC-UUCUUGUu -3'
miRNA:   3'- -CGaCguCCgGGGGGCGGcAGGAACGu -5'
5584 3' -63.1 NC_001806.1 + 74849 0.69 0.387576
Target:  5'- gGCUaaAGGCCUguCCgGCCGUCCUgGCGa -3'
miRNA:   3'- -CGAcgUCCGGG--GGgCGGCAGGAaCGU- -5'
5584 3' -63.1 NC_001806.1 + 135780 0.69 0.387576
Target:  5'- aGCUGCGGcgcccGCCCCCCcUgGUCCUggcccGCAg -3'
miRNA:   3'- -CGACGUC-----CGGGGGGcGgCAGGAa----CGU- -5'
5584 3' -63.1 NC_001806.1 + 31099 0.69 0.3796
Target:  5'- gGCUGCGGGCCgcgguCCCCGgCUGgagCCgccGCAc -3'
miRNA:   3'- -CGACGUCCGG-----GGGGC-GGCa--GGaa-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.