Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5584 | 5' | -58.6 | NC_001806.1 | + | 25399 | 0.66 | 0.826938 |
Target: 5'- --gGCGAGGGG-CGggaGGGGGcgagggGCGGUg -3' miRNA: 3'- agaCGUUCUCCaGCag-CCCCC------UGCCA- -5' |
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5584 | 5' | -58.6 | NC_001806.1 | + | 118048 | 0.7 | 0.578797 |
Target: 5'- gCUGUuGGuGGUgGUCGaGGGGCGGUa -3' miRNA: 3'- aGACGuUCuCCAgCAGCcCCCUGCCA- -5' |
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5584 | 5' | -58.6 | NC_001806.1 | + | 15093 | 0.7 | 0.588723 |
Target: 5'- --cGCGGGGGaGUUGuugggaUCGGGGGAUGGg -3' miRNA: 3'- agaCGUUCUC-CAGC------AGCCCCCUGCCa -5' |
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5584 | 5' | -58.6 | NC_001806.1 | + | 105097 | 0.7 | 0.598679 |
Target: 5'- aUCUGCAGGgcggcGGGUCGUggCGGGaGGAuUGGg -3' miRNA: 3'- -AGACGUUC-----UCCAGCA--GCCC-CCU-GCCa -5' |
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5584 | 5' | -58.6 | NC_001806.1 | + | 145544 | 0.7 | 0.608659 |
Target: 5'- cCUGgGGGGGGggaGUgCGGGGGAgGGg -3' miRNA: 3'- aGACgUUCUCCag-CA-GCCCCCUgCCa -5' |
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5584 | 5' | -58.6 | NC_001806.1 | + | 33974 | 0.69 | 0.628661 |
Target: 5'- aUCgUGCGggccGGGGGUCGcCGGggcaGGGGCGGg -3' miRNA: 3'- -AG-ACGU----UCUCCAGCaGCC----CCCUGCCa -5' |
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5584 | 5' | -58.6 | NC_001806.1 | + | 143814 | 0.69 | 0.63867 |
Target: 5'- --aGgGAGGGGgUGaCGGGGGACGGg -3' miRNA: 3'- agaCgUUCUCCaGCaGCCCCCUGCCa -5' |
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5584 | 5' | -58.6 | NC_001806.1 | + | 66541 | 0.69 | 0.648674 |
Target: 5'- --cGCGAGGGGgaaGUCGGGGuuuCGGUu -3' miRNA: 3'- agaCGUUCUCCag-CAGCCCCcu-GCCA- -5' |
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5584 | 5' | -58.6 | NC_001806.1 | + | 151278 | 0.69 | 0.668636 |
Target: 5'- --cGguGGGGGcCGgggcCGGGGGGCGGc -3' miRNA: 3'- agaCguUCUCCaGCa---GCCCCCUGCCa -5' |
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5584 | 5' | -58.6 | NC_001806.1 | + | 151098 | 0.7 | 0.55906 |
Target: 5'- --cGCGGG-GGUCG-CGGGGGucGCGGg -3' miRNA: 3'- agaCGUUCuCCAGCaGCCCCC--UGCCa -5' |
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5584 | 5' | -58.6 | NC_001806.1 | + | 151069 | 0.71 | 0.529832 |
Target: 5'- --cGCGcGGGGGUCG-CGGGGGucGCGGg -3' miRNA: 3'- agaCGU-UCUCCAGCaGCCCCC--UGCCa -5' |
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5584 | 5' | -58.6 | NC_001806.1 | + | 55628 | 0.71 | 0.529832 |
Target: 5'- --gGCuuGGGGGUUGUUGGGGGGCuGGc -3' miRNA: 3'- agaCGu-UCUCCAGCAGCCCCCUG-CCa -5' |
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5584 | 5' | -58.6 | NC_001806.1 | + | 69600 | 0.79 | 0.203837 |
Target: 5'- cUCUGCGAGGcGGUCGgccugUCGGGGGGCGu- -3' miRNA: 3'- -AGACGUUCU-CCAGC-----AGCCCCCUGCca -5' |
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5584 | 5' | -58.6 | NC_001806.1 | + | 83902 | 0.75 | 0.339502 |
Target: 5'- aCUGCAcGGAGGgUCGgCGcGGGGGCGGg -3' miRNA: 3'- aGACGU-UCUCC-AGCaGC-CCCCUGCCa -5' |
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5584 | 5' | -58.6 | NC_001806.1 | + | 148175 | 0.75 | 0.347015 |
Target: 5'- cUCUGCGugGGGGGgcgCGgggcguccggCGGGGGGCGGg -3' miRNA: 3'- -AGACGU--UCUCCa--GCa---------GCCCCCUGCCa -5' |
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5584 | 5' | -58.6 | NC_001806.1 | + | 147780 | 0.74 | 0.362395 |
Target: 5'- --cGCGGGGGGccCGgggCGGGGGGCGGa -3' miRNA: 3'- agaCGUUCUCCa-GCa--GCCCCCUGCCa -5' |
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5584 | 5' | -58.6 | NC_001806.1 | + | 12815 | 0.74 | 0.37026 |
Target: 5'- gUUGUucGGGGUgGcCGGGGGAUGGUa -3' miRNA: 3'- aGACGuuCUCCAgCaGCCCCCUGCCA- -5' |
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5584 | 5' | -58.6 | NC_001806.1 | + | 20987 | 0.74 | 0.386337 |
Target: 5'- gUCgacgGCGGG-GGUCGUCGGGGuccGugGGUc -3' miRNA: 3'- -AGa---CGUUCuCCAGCAGCCCC---CugCCA- -5' |
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5584 | 5' | -58.6 | NC_001806.1 | + | 93700 | 0.73 | 0.402869 |
Target: 5'- gCUGUGAGGGGUUG--GGGGGugGGg -3' miRNA: 3'- aGACGUUCUCCAGCagCCCCCugCCa -5' |
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5584 | 5' | -58.6 | NC_001806.1 | + | 56672 | 0.71 | 0.51066 |
Target: 5'- aUCguuGGGGGGUCGg-GGGGGACGGg -3' miRNA: 3'- -AGacgUUCUCCAGCagCCCCCUGCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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