miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5585 5' -59.9 NC_001806.1 + 147467 0.66 0.724037
Target:  5'- uGCUCgacagaggCgGCggaGGGGAGCGGGGCg -3'
miRNA:   3'- gCGAGaca-----GgUGg--CCCUUCGUCCCGg -5'
5585 5' -59.9 NC_001806.1 + 84110 0.66 0.723076
Target:  5'- uCGCgccacgGUCCGCCaguccuGGGAAGCgcaucgcGGGGCa -3'
miRNA:   3'- -GCGaga---CAGGUGG------CCCUUCG-------UCCCGg -5'
5585 5' -59.9 NC_001806.1 + 93193 0.67 0.704685
Target:  5'- gGC-CUGUCCccggGCCGGGuuuguguGCGcGGCCu -3'
miRNA:   3'- gCGaGACAGG----UGGCCCuu-----CGUcCCGG- -5'
5585 5' -59.9 NC_001806.1 + 25517 0.67 0.704685
Target:  5'- gCGCgg-GaCgCGCCGGGGagGGCuGGGGCCg -3'
miRNA:   3'- -GCGagaCaG-GUGGCCCU--UCG-UCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 135051 0.67 0.704685
Target:  5'- cCGCgaUCUGgaccggccCCGCgGGGAcGCGccGGGCCg -3'
miRNA:   3'- -GCG--AGACa-------GGUGgCCCUuCGU--CCCGG- -5'
5585 5' -59.9 NC_001806.1 + 37781 0.67 0.694918
Target:  5'- uCGCUCcGgg-GCCGGGgcGCGGGGguCCg -3'
miRNA:   3'- -GCGAGaCaggUGGCCCuuCGUCCC--GG- -5'
5585 5' -59.9 NC_001806.1 + 23312 0.67 0.694918
Target:  5'- gGCcCgg-CCGCCcGGAGGCGGcGGCCc -3'
miRNA:   3'- gCGaGacaGGUGGcCCUUCGUC-CCGG- -5'
5585 5' -59.9 NC_001806.1 + 120305 0.67 0.685102
Target:  5'- cCGUcCUGgcaCACCuGGGggGaCGGGGCg -3'
miRNA:   3'- -GCGaGACag-GUGG-CCCuuC-GUCCCGg -5'
5585 5' -59.9 NC_001806.1 + 151276 0.67 0.685102
Target:  5'- gGCggUGggggCCgggGCCGGGggGCGgcggcgguGGGCCg -3'
miRNA:   3'- gCGagACa---GG---UGGCCCuuCGU--------CCCGG- -5'
5585 5' -59.9 NC_001806.1 + 52525 0.67 0.684118
Target:  5'- gGCUCguggcGUCuCGCCGGacgacguGGuccGCGGGGCCu -3'
miRNA:   3'- gCGAGa----CAG-GUGGCC-------CUu--CGUCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 9153 0.67 0.675243
Target:  5'- aGC-CUGgagggCCAUCGGGGAGaCAacGGCCg -3'
miRNA:   3'- gCGaGACa----GGUGGCCCUUC-GUc-CCGG- -5'
5585 5' -59.9 NC_001806.1 + 3330 0.67 0.675243
Target:  5'- cCGCgg-GUCCcuccgGCCgcGGGggGCuggcGGGCCg -3'
miRNA:   3'- -GCGagaCAGG-----UGG--CCCuuCGu---CCCGG- -5'
5585 5' -59.9 NC_001806.1 + 81832 0.67 0.675243
Target:  5'- gGC-CUGUgCCA-CGGGcGGgAGGGCCc -3'
miRNA:   3'- gCGaGACA-GGUgGCCCuUCgUCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 77827 0.67 0.675243
Target:  5'- aCGCUUUGUgcgCCACCGcaGGcGAGauggGGGGCCu -3'
miRNA:   3'- -GCGAGACA---GGUGGC--CC-UUCg---UCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 11871 0.67 0.675243
Target:  5'- aCGCUC-----GCCGGGGccagacGCGGGGCCg -3'
miRNA:   3'- -GCGAGacaggUGGCCCUu-----CGUCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 64940 0.67 0.675243
Target:  5'- cCGCUgaGggaCCACCGGcGucGGCGcccGGGCCg -3'
miRNA:   3'- -GCGAgaCa--GGUGGCC-Cu-UCGU---CCCGG- -5'
5585 5' -59.9 NC_001806.1 + 53873 0.67 0.665352
Target:  5'- aGCUguUUGgcagCCGCgCGGGGAuCAGGGUCg -3'
miRNA:   3'- gCGA--GACa---GGUG-GCCCUUcGUCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 24996 0.68 0.655436
Target:  5'- gGUgCUGUaacggGCCGGGAcggGGCGGGGCg -3'
miRNA:   3'- gCGaGACAgg---UGGCCCU---UCGUCCCGg -5'
5585 5' -59.9 NC_001806.1 + 37912 0.68 0.645502
Target:  5'- aCGcCUCg--CCAUgGGGgcGcCGGGGCCg -3'
miRNA:   3'- -GC-GAGacaGGUGgCCCuuC-GUCCCGG- -5'
5585 5' -59.9 NC_001806.1 + 21901 0.68 0.635558
Target:  5'- cCGCaUCgagcgCCGCCGGGcccgcgcGGCGGuGGCCg -3'
miRNA:   3'- -GCG-AGaca--GGUGGCCCu------UCGUC-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.