miRNA display CGI


Results 1 - 20 of 24 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5587 3' -57.7 NC_001806.1 + 66830 0.66 0.851581
Target:  5'- --cCcgGGuGGCCGgugugcgCCgCCUCCugGGg -3'
miRNA:   3'- gaaGuaCCuCCGGCa------GG-GGAGGugUC- -5'
5587 3' -57.7 NC_001806.1 + 89020 0.66 0.84369
Target:  5'- -----cGGAGGacgucgcgcUCGUCCCCcCCGCAGu -3'
miRNA:   3'- gaaguaCCUCC---------GGCAGGGGaGGUGUC- -5'
5587 3' -57.7 NC_001806.1 + 131873 0.66 0.835609
Target:  5'- -gUCGUGGcGGCCG-CCCgCgCCGCGa -3'
miRNA:   3'- gaAGUACCuCCGGCaGGG-GaGGUGUc -5'
5587 3' -57.7 NC_001806.1 + 30740 0.66 0.835609
Target:  5'- -----cGGGGGCCGcCUCUUCCGCc- -3'
miRNA:   3'- gaaguaCCUCCGGCaGGGGAGGUGuc -5'
5587 3' -57.7 NC_001806.1 + 30910 0.66 0.835609
Target:  5'- aCUUCc--GGGGCCGUCCCCgcggGCGGc -3'
miRNA:   3'- -GAAGuacCUCCGGCAGGGGagg-UGUC- -5'
5587 3' -57.7 NC_001806.1 + 54972 0.66 0.834791
Target:  5'- --aCAccUGGuGGUCGUCCUcgaaccagacaaaCUCCACGGg -3'
miRNA:   3'- gaaGU--ACCuCCGGCAGGG-------------GAGGUGUC- -5'
5587 3' -57.7 NC_001806.1 + 75728 0.66 0.827348
Target:  5'- --aCGUGGAGGCCGUgCUggaCCGCGu -3'
miRNA:   3'- gaaGUACCUCCGGCAgGGga-GGUGUc -5'
5587 3' -57.7 NC_001806.1 + 3521 0.66 0.818913
Target:  5'- --gCGUcGGGGUCGUCgCCCcCCGCGGg -3'
miRNA:   3'- gaaGUAcCUCCGGCAG-GGGaGGUGUC- -5'
5587 3' -57.7 NC_001806.1 + 133391 0.67 0.792642
Target:  5'- -aUCuUGGGGGauuUCCUCUCCGCGGg -3'
miRNA:   3'- gaAGuACCUCCggcAGGGGAGGUGUC- -5'
5587 3' -57.7 NC_001806.1 + 107359 0.67 0.774406
Target:  5'- gUUCuUGGcuGgCGUCCCCUCgGCGGu -3'
miRNA:   3'- gAAGuACCucCgGCAGGGGAGgUGUC- -5'
5587 3' -57.7 NC_001806.1 + 22382 0.68 0.755672
Target:  5'- --gCGUGGcgcGGGCCGUgCCCCaCCugGGc -3'
miRNA:   3'- gaaGUACC---UCCGGCA-GGGGaGGugUC- -5'
5587 3' -57.7 NC_001806.1 + 119241 0.68 0.755672
Target:  5'- -gUC-UGGGGGaaagcgCGUCCCCgcgUCCGCAGc -3'
miRNA:   3'- gaAGuACCUCCg-----GCAGGGG---AGGUGUC- -5'
5587 3' -57.7 NC_001806.1 + 62478 0.68 0.74614
Target:  5'- ---gGUGGAGGCUgggaggGUCCCgUCCGCc- -3'
miRNA:   3'- gaagUACCUCCGG------CAGGGgAGGUGuc -5'
5587 3' -57.7 NC_001806.1 + 64847 0.68 0.73651
Target:  5'- -----cGGGGGuCCGaaagCCCCUCCGCGc -3'
miRNA:   3'- gaaguaCCUCC-GGCa---GGGGAGGUGUc -5'
5587 3' -57.7 NC_001806.1 + 90609 0.68 0.72386
Target:  5'- gCUUCAaGGAGGCCGUgugcaucaacaacaCCUUUCUGCAc -3'
miRNA:   3'- -GAAGUaCCUCCGGCA--------------GGGGAGGUGUc -5'
5587 3' -57.7 NC_001806.1 + 148923 0.68 0.716993
Target:  5'- -gUCAUGGuGGUcggCGUCCCC-CCGCc- -3'
miRNA:   3'- gaAGUACCuCCG---GCAGGGGaGGUGuc -5'
5587 3' -57.7 NC_001806.1 + 113089 0.68 0.716993
Target:  5'- --aCGUGGcggccccGGCCGgCCCCgCCGCAGa -3'
miRNA:   3'- gaaGUACCu------CCGGCaGGGGaGGUGUC- -5'
5587 3' -57.7 NC_001806.1 + 87886 0.68 0.707124
Target:  5'- gUUCAUGc-GGCCGUaCCCgUCCAgGGg -3'
miRNA:   3'- gAAGUACcuCCGGCA-GGGgAGGUgUC- -5'
5587 3' -57.7 NC_001806.1 + 91888 0.69 0.667111
Target:  5'- --aCGUGGAccaGGCgGUCCCCacggCCAUGGg -3'
miRNA:   3'- gaaGUACCU---CCGgCAGGGGa---GGUGUC- -5'
5587 3' -57.7 NC_001806.1 + 93805 0.7 0.616527
Target:  5'- -cUC-UGGGcGGCCGugauUCCUCUCCGCGGu -3'
miRNA:   3'- gaAGuACCU-CCGGC----AGGGGAGGUGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.