Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5587 | 5' | -58 | NC_001806.1 | + | 93558 | 0.7 | 0.572771 |
Target: 5'- -gCUGCGAggacgacaacGCGAcGCCguucggcgGCCCGGGGGc -3' miRNA: 3'- caGACGCU----------CGUUaUGGa-------CGGGCCCCU- -5' |
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5587 | 5' | -58 | NC_001806.1 | + | 94722 | 0.7 | 0.572771 |
Target: 5'- -gCUGCG-GCGGUACCUGCCCcacgccgccGGGc- -3' miRNA: 3'- caGACGCuCGUUAUGGACGGG---------CCCcu -5' |
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5587 | 5' | -58 | NC_001806.1 | + | 10764 | 0.71 | 0.552757 |
Target: 5'- cGUCU-CGGGC---ACCUGCuuGGGGGg -3' miRNA: 3'- -CAGAcGCUCGuuaUGGACGggCCCCU- -5' |
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5587 | 5' | -58 | NC_001806.1 | + | 30921 | 0.71 | 0.523153 |
Target: 5'- cGUCcccGCGGGCGGccuacgcgcUACCUGCCCaucucGGGGGu -3' miRNA: 3'- -CAGa--CGCUCGUU---------AUGGACGGG-----CCCCU- -5' |
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5587 | 5' | -58 | NC_001806.1 | + | 69600 | 0.77 | 0.233599 |
Target: 5'- cUCUGCGAGgCGGUcgGCCUGUCgGGGGGc -3' miRNA: 3'- cAGACGCUC-GUUA--UGGACGGgCCCCU- -5' |
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5587 | 5' | -58 | NC_001806.1 | + | 20391 | 0.81 | 0.138264 |
Target: 5'- cGUCcgGCGGGCGggACCgggggGCCCGGGGAc -3' miRNA: 3'- -CAGa-CGCUCGUuaUGGa----CGGGCCCCU- -5' |
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5587 | 5' | -58 | NC_001806.1 | + | 120549 | 1.08 | 0.001878 |
Target: 5'- gGUCUGCGAGCAAUACCUGCCCGGGGAa -3' miRNA: 3'- -CAGACGCUCGUUAUGGACGGGCCCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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