miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5587 5' -58 NC_001806.1 + 93558 0.7 0.572771
Target:  5'- -gCUGCGAggacgacaacGCGAcGCCguucggcgGCCCGGGGGc -3'
miRNA:   3'- caGACGCU----------CGUUaUGGa-------CGGGCCCCU- -5'
5587 5' -58 NC_001806.1 + 94722 0.7 0.572771
Target:  5'- -gCUGCG-GCGGUACCUGCCCcacgccgccGGGc- -3'
miRNA:   3'- caGACGCuCGUUAUGGACGGG---------CCCcu -5'
5587 5' -58 NC_001806.1 + 10764 0.71 0.552757
Target:  5'- cGUCU-CGGGC---ACCUGCuuGGGGGg -3'
miRNA:   3'- -CAGAcGCUCGuuaUGGACGggCCCCU- -5'
5587 5' -58 NC_001806.1 + 30921 0.71 0.523153
Target:  5'- cGUCcccGCGGGCGGccuacgcgcUACCUGCCCaucucGGGGGu -3'
miRNA:   3'- -CAGa--CGCUCGUU---------AUGGACGGG-----CCCCU- -5'
5587 5' -58 NC_001806.1 + 69600 0.77 0.233599
Target:  5'- cUCUGCGAGgCGGUcgGCCUGUCgGGGGGc -3'
miRNA:   3'- cAGACGCUC-GUUA--UGGACGGgCCCCU- -5'
5587 5' -58 NC_001806.1 + 20391 0.81 0.138264
Target:  5'- cGUCcgGCGGGCGggACCgggggGCCCGGGGAc -3'
miRNA:   3'- -CAGa-CGCUCGUuaUGGa----CGGGCCCCU- -5'
5587 5' -58 NC_001806.1 + 120549 1.08 0.001878
Target:  5'- gGUCUGCGAGCAAUACCUGCCCGGGGAa -3'
miRNA:   3'- -CAGACGCUCGUUAUGGACGGGCCCCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.