miRNA display CGI


Results 21 - 40 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5588 3' -68.4 NC_001806.1 + 79916 0.74 0.10644
Target:  5'- cCCGuucCGCCCCcggucgcaaccggcACGGuuuuGCCCGGGGGCGAa -3'
miRNA:   3'- -GGUc--GCGGGG--------------UGCC----CGGGCCCCCGCU- -5'
5588 3' -68.4 NC_001806.1 + 87652 0.74 0.117992
Target:  5'- cCCcGCGUUgCGCGGGCCCGGcGGCGu -3'
miRNA:   3'- -GGuCGCGGgGUGCCCGGGCCcCCGCu -5'
5588 3' -68.4 NC_001806.1 + 4123 0.74 0.120841
Target:  5'- uCgGGCGCCCCccaGaGGCCCGGGcGGCu- -3'
miRNA:   3'- -GgUCGCGGGGug-C-CCGGGCCC-CCGcu -5'
5588 3' -68.4 NC_001806.1 + 83236 0.74 0.123754
Target:  5'- gUCAcCGCCCCcucaaGGGCCCgcggGGGGGCGGg -3'
miRNA:   3'- -GGUcGCGGGGug---CCCGGG----CCCCCGCU- -5'
5588 3' -68.4 NC_001806.1 + 75499 0.73 0.126431
Target:  5'- aCCGGCgcgcgggaaaGCCUCGCGGGCCacgagggcagguuCGGGGGCc- -3'
miRNA:   3'- -GGUCG----------CGGGGUGCCCGG-------------GCCCCCGcu -5'
5588 3' -68.4 NC_001806.1 + 151248 0.73 0.126732
Target:  5'- gUCAGCcccGCCCCcCGGGCCCacgccgggcgguGGGGGCc- -3'
miRNA:   3'- -GGUCG---CGGGGuGCCCGGG------------CCCCCGcu -5'
5588 3' -68.4 NC_001806.1 + 30841 0.73 0.126732
Target:  5'- cUCGGC-CCCCGCgcugcuucuGGGCCgCGGGGGcCGAg -3'
miRNA:   3'- -GGUCGcGGGGUG---------CCCGG-GCCCCC-GCU- -5'
5588 3' -68.4 NC_001806.1 + 103468 0.73 0.132888
Target:  5'- aCCGGCGUCUgGCGuGGgaaaaCCCGGGGGCu- -3'
miRNA:   3'- -GGUCGCGGGgUGC-CC-----GGGCCCCCGcu -5'
5588 3' -68.4 NC_001806.1 + 2673 0.73 0.136068
Target:  5'- gCgGGCGCCgCCGuguggcUGGGcCCCGGGGGCu- -3'
miRNA:   3'- -GgUCGCGG-GGU------GCCC-GGGCCCCCGcu -5'
5588 3' -68.4 NC_001806.1 + 89264 0.73 0.139318
Target:  5'- cCCGGCugGCUCCGCGaGGgCCGGcGGGCGc -3'
miRNA:   3'- -GGUCG--CGGGGUGC-CCgGGCC-CCCGCu -5'
5588 3' -68.4 NC_001806.1 + 95423 0.73 0.146033
Target:  5'- ---cCGUCgCCGCGGGCCCgGGGGGCa- -3'
miRNA:   3'- ggucGCGG-GGUGCCCGGG-CCCCCGcu -5'
5588 3' -68.4 NC_001806.1 + 57018 0.73 0.146033
Target:  5'- cCCAGUGCCaggCAcuggguggcCGGGCCCGGGGcCGGg -3'
miRNA:   3'- -GGUCGCGGg--GU---------GCCCGGGCCCCcGCU- -5'
5588 3' -68.4 NC_001806.1 + 150883 0.72 0.153041
Target:  5'- gCCAGgGCCCgggCACGGGCCuCGGGccccaGGCa- -3'
miRNA:   3'- -GGUCgCGGG---GUGCCCGG-GCCC-----CCGcu -5'
5588 3' -68.4 NC_001806.1 + 81467 0.72 0.153041
Target:  5'- aCGGC-CCCUugGGuGCCCuGGGGGUGc -3'
miRNA:   3'- gGUCGcGGGGugCC-CGGG-CCCCCGCu -5'
5588 3' -68.4 NC_001806.1 + 11354 0.72 0.167979
Target:  5'- cCCAGcCGCCCCAgCGGGCuCCGacucuucGGCGAu -3'
miRNA:   3'- -GGUC-GCGGGGU-GCCCG-GGCcc-----CCGCU- -5'
5588 3' -68.4 NC_001806.1 + 27311 0.72 0.167979
Target:  5'- aCCAGCGuCCgCCGagucuucgGGGCCCGGcccauuGGGCGGg -3'
miRNA:   3'- -GGUCGC-GG-GGUg-------CCCGGGCC------CCCGCU- -5'
5588 3' -68.4 NC_001806.1 + 2729 0.72 0.169543
Target:  5'- gUCGGgGCCCUcgGCGGGCCggcgcgacacggccaCGGGGcGCGGg -3'
miRNA:   3'- -GGUCgCGGGG--UGCCCGG---------------GCCCC-CGCU- -5'
5588 3' -68.4 NC_001806.1 + 56932 0.72 0.171913
Target:  5'- -gGGUGCCgacgaaCAgGGGCCCcGGGGCGAg -3'
miRNA:   3'- ggUCGCGGg-----GUgCCCGGGcCCCCGCU- -5'
5588 3' -68.4 NC_001806.1 + 24772 0.71 0.175929
Target:  5'- gCUGGUGCUgCGCGgcgacgacgacGGCCCGGGGGCc- -3'
miRNA:   3'- -GGUCGCGGgGUGC-----------CCGGGCCCCCGcu -5'
5588 3' -68.4 NC_001806.1 + 5095 0.71 0.184211
Target:  5'- gCGGCGgCCCGucggugGGGCCCGGGGaGCc- -3'
miRNA:   3'- gGUCGCgGGGUg-----CCCGGGCCCC-CGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.