miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5588 5' -51.4 NC_001806.1 + 90238 0.66 0.991997
Target:  5'- cAGCGGCGaUUCcgacgucGCCgUggcGCCCCUGGu -3'
miRNA:   3'- -UUGCUGC-AAGau-----UGGgAa--UGGGGACC- -5'
5588 5' -51.4 NC_001806.1 + 120797 0.66 0.990828
Target:  5'- cGCGcCGU--UGGCCCccGCCUCUGGg -3'
miRNA:   3'- uUGCuGCAagAUUGGGaaUGGGGACC- -5'
5588 5' -51.4 NC_001806.1 + 94640 0.66 0.990828
Target:  5'- gGGCGACGaUC--GCCC--GCCgCCUGGc -3'
miRNA:   3'- -UUGCUGCaAGauUGGGaaUGG-GGACC- -5'
5588 5' -51.4 NC_001806.1 + 32681 0.67 0.984754
Target:  5'- -gUGGCGUggCcGACCUUaGCCUCUGGg -3'
miRNA:   3'- uuGCUGCAa-GaUUGGGAaUGGGGACC- -5'
5588 5' -51.4 NC_001806.1 + 45580 0.67 0.982841
Target:  5'- --gGGCGUgUCUGuUUCUUgGCCCCUGGg -3'
miRNA:   3'- uugCUGCA-AGAUuGGGAA-UGGGGACC- -5'
5588 5' -51.4 NC_001806.1 + 87254 0.67 0.982841
Target:  5'- --aGugGggUCaagGACCCUggcCCCCUGGu -3'
miRNA:   3'- uugCugCa-AGa--UUGGGAau-GGGGACC- -5'
5588 5' -51.4 NC_001806.1 + 104916 0.67 0.980753
Target:  5'- -cUGGCGUUCgUGGCCCUcAUCCCg-- -3'
miRNA:   3'- uuGCUGCAAG-AUUGGGAaUGGGGacc -5'
5588 5' -51.4 NC_001806.1 + 100068 0.67 0.976015
Target:  5'- cGGCGACGcuUUCccGACCCccggACCCCaGGg -3'
miRNA:   3'- -UUGCUGC--AAGa-UUGGGaa--UGGGGaCC- -5'
5588 5' -51.4 NC_001806.1 + 77520 0.67 0.976015
Target:  5'- uGCGA-GUgagCggaGGCCCgggGCCCCUGGu -3'
miRNA:   3'- uUGCUgCAa--Ga--UUGGGaa-UGGGGACC- -5'
5588 5' -51.4 NC_001806.1 + 113383 0.68 0.973349
Target:  5'- cGGCGGCGUUCcgggacGCCCgggGCCUggagCUGGg -3'
miRNA:   3'- -UUGCUGCAAGau----UGGGaa-UGGG----GACC- -5'
5588 5' -51.4 NC_001806.1 + 26254 0.68 0.967386
Target:  5'- uGGCGGCGggC-AGCCCggGCCCCc-- -3'
miRNA:   3'- -UUGCUGCaaGaUUGGGaaUGGGGacc -5'
5588 5' -51.4 NC_001806.1 + 124757 0.68 0.960535
Target:  5'- cACGACGUcggguuagcggUUGACCUgUACgCCCUGGg -3'
miRNA:   3'- uUGCUGCAa----------GAUUGGGaAUG-GGGACC- -5'
5588 5' -51.4 NC_001806.1 + 75874 0.68 0.960535
Target:  5'- --aGGCGg--UGACCCUUG-CCCUGGa -3'
miRNA:   3'- uugCUGCaagAUUGGGAAUgGGGACC- -5'
5588 5' -51.4 NC_001806.1 + 60566 0.68 0.960535
Target:  5'- aGACGACGag--GACCUc--CCCCUGGa -3'
miRNA:   3'- -UUGCUGCaagaUUGGGaauGGGGACC- -5'
5588 5' -51.4 NC_001806.1 + 120845 0.69 0.952749
Target:  5'- cAUGGCGcagCUggGACCCcggcgGCCCCUGGc -3'
miRNA:   3'- uUGCUGCaa-GA--UUGGGaa---UGGGGACC- -5'
5588 5' -51.4 NC_001806.1 + 23771 0.69 0.952749
Target:  5'- cGACGACGa--UAACCCccACCCCcacgGGg -3'
miRNA:   3'- -UUGCUGCaagAUUGGGaaUGGGGa---CC- -5'
5588 5' -51.4 NC_001806.1 + 74508 0.69 0.948493
Target:  5'- uGCGGCGcUUCgacGCCCUagaUGCggCCCUGGg -3'
miRNA:   3'- uUGCUGC-AAGau-UGGGA---AUG--GGGACC- -5'
5588 5' -51.4 NC_001806.1 + 113346 0.7 0.92347
Target:  5'- cGCGugGUg--AACggcaaCUUGCCCCUGGc -3'
miRNA:   3'- uUGCugCAagaUUGg----GAAUGGGGACC- -5'
5588 5' -51.4 NC_001806.1 + 92387 0.7 0.917707
Target:  5'- gGGCGACGUU---GCCCgcgugaCCCUGGg -3'
miRNA:   3'- -UUGCUGCAAgauUGGGaaug--GGGACC- -5'
5588 5' -51.4 NC_001806.1 + 77395 0.7 0.911691
Target:  5'- cGCGGCGgcCgcGCCCgcGCCCCUGc -3'
miRNA:   3'- uUGCUGCaaGauUGGGaaUGGGGACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.