miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5589 3' -57.8 NC_001806.1 + 118753 1.06 0.003479
Target:  5'- cGGGAAUCCC-CUGGCCGCCCUGAUGCg -3'
miRNA:   3'- -CCCUUAGGGaGACCGGCGGGACUACG- -5'
5589 3' -57.8 NC_001806.1 + 22673 0.78 0.232937
Target:  5'- cGGGGAUCCUc---GCCGCCCUGggGCg -3'
miRNA:   3'- -CCCUUAGGGagacCGGCGGGACuaCG- -5'
5589 3' -57.8 NC_001806.1 + 127743 0.76 0.329739
Target:  5'- cGGAAUCCCgggCgGGCUGCCg-GGUGCg -3'
miRNA:   3'- cCCUUAGGGa--GaCCGGCGGgaCUACG- -5'
5589 3' -57.8 NC_001806.1 + 30958 0.75 0.352339
Target:  5'- cGGGggUCUCUagcgUGGUCGCCCUGucGCc -3'
miRNA:   3'- -CCCuuAGGGAg---ACCGGCGGGACuaCG- -5'
5589 3' -57.8 NC_001806.1 + 147300 0.74 0.399898
Target:  5'- gGGGggUCCCgggcccaccCUGGCCgcgcccccccgGCCCUGAgucggagggggggUGCg -3'
miRNA:   3'- -CCCuuAGGGa--------GACCGG-----------CGGGACU-------------ACG- -5'
5589 3' -57.8 NC_001806.1 + 23986 0.73 0.462268
Target:  5'- cGGGcuGUCCUgccugCUGGCgGCCCUGGccaaccggcugUGCg -3'
miRNA:   3'- -CCCu-UAGGGa----GACCGgCGGGACU-----------ACG- -5'
5589 3' -57.8 NC_001806.1 + 33324 0.72 0.514875
Target:  5'- gGGGAGgaugucgccgacgCCCcUUGGCCGCCCcGGcUGCa -3'
miRNA:   3'- -CCCUUa------------GGGaGACCGGCGGGaCU-ACG- -5'
5589 3' -57.8 NC_001806.1 + 145705 0.72 0.528413
Target:  5'- gGGGGAUggaguaccggCCCacCUGGCCGCgCgGGUGCg -3'
miRNA:   3'- -CCCUUA----------GGGa-GACCGGCGgGaCUACG- -5'
5589 3' -57.8 NC_001806.1 + 43120 0.71 0.557843
Target:  5'- cGGGAGUCCC---GGCCGCCCg----- -3'
miRNA:   3'- -CCCUUAGGGagaCCGGCGGGacuacg -5'
5589 3' -57.8 NC_001806.1 + 67350 0.7 0.617876
Target:  5'- cGGGGAgCCgaUCagGGCCGCCCccccgcgcaUGGUGCc -3'
miRNA:   3'- -CCCUUaGGg-AGa-CCGGCGGG---------ACUACG- -5'
5589 3' -57.8 NC_001806.1 + 136523 0.7 0.648126
Target:  5'- gGGGAAgcuugacgggCCgCUCgGGCCGCCCg---GCg -3'
miRNA:   3'- -CCCUUa---------GG-GAGaCCGGCGGGacuaCG- -5'
5589 3' -57.8 NC_001806.1 + 7666 0.7 0.648126
Target:  5'- aGGGcucuaCCCUCUGGaCGCCCgGgcGCu -3'
miRNA:   3'- -CCCuua--GGGAGACCgGCGGGaCuaCG- -5'
5589 3' -57.8 NC_001806.1 + 50183 0.69 0.668244
Target:  5'- uGGggUCCCUgCUGuaCugGCCCggGGUGCg -3'
miRNA:   3'- cCCuuAGGGA-GACcgG--CGGGa-CUACG- -5'
5589 3' -57.8 NC_001806.1 + 102346 0.69 0.668244
Target:  5'- gGGGAcGUCCCcCggGGCCGCCggGA-GCa -3'
miRNA:   3'- -CCCU-UAGGGaGa-CCGGCGGgaCUaCG- -5'
5589 3' -57.8 NC_001806.1 + 118902 0.69 0.678264
Target:  5'- uGGGGGagCUUCUGGCC-CCCgucGUGCc -3'
miRNA:   3'- -CCCUUagGGAGACCGGcGGGac-UACG- -5'
5589 3' -57.8 NC_001806.1 + 113819 0.69 0.678264
Target:  5'- -----cCCCUCgugugGGacugugaCGCCCUGAUGCg -3'
miRNA:   3'- cccuuaGGGAGa----CCg------GCGGGACUACG- -5'
5589 3' -57.8 NC_001806.1 + 137614 0.69 0.688248
Target:  5'- -cGAGUUUCgcgccCUGGCCGCCCUGGa-- -3'
miRNA:   3'- ccCUUAGGGa----GACCGGCGGGACUacg -5'
5589 3' -57.8 NC_001806.1 + 70331 0.69 0.698186
Target:  5'- ------gCC-CUGGCCGCCCggggGGUGCu -3'
miRNA:   3'- cccuuagGGaGACCGGCGGGa---CUACG- -5'
5589 3' -57.8 NC_001806.1 + 4379 0.69 0.698186
Target:  5'- cGGGggU-CCUCgccGCCGCCC-GggGCu -3'
miRNA:   3'- -CCCuuAgGGAGac-CGGCGGGaCuaCG- -5'
5589 3' -57.8 NC_001806.1 + 3324 0.68 0.726671
Target:  5'- cGGGGcccgcggGUCCCUCcGGCCGCgg-GggGCu -3'
miRNA:   3'- -CCCU-------UAGGGAGaCCGGCGggaCuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.