miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5589 5' -55.7 NC_001806.1 + 79866 0.67 0.886808
Target:  5'- -cGCUCGGGccccaGGCCGCcggccAGGCUUCUc -3'
miRNA:   3'- ccUGAGCCCug---CCGGCG-----UUUGAAGGu -5'
5589 5' -55.7 NC_001806.1 + 120322 0.67 0.879874
Target:  5'- gGGGgaCGGGGCGGUCGgGGGCggcgggucgUCCc -3'
miRNA:   3'- -CCUgaGCCCUGCCGGCgUUUGa--------AGGu -5'
5589 5' -55.7 NC_001806.1 + 24891 0.67 0.879874
Target:  5'- aGGuGCUgGGGGCGGagGCGGGCUUggCCAc -3'
miRNA:   3'- -CC-UGAgCCCUGCCggCGUUUGAA--GGU- -5'
5589 5' -55.7 NC_001806.1 + 22169 0.67 0.871995
Target:  5'- aGGcCUCGGGcgccccgGCGGCCGUguGGGCgcCCGa -3'
miRNA:   3'- -CCuGAGCCC-------UGCCGGCG--UUUGaaGGU- -5'
5589 5' -55.7 NC_001806.1 + 4057 0.67 0.871995
Target:  5'- -aGCUCGGGcgcccacACGGCCGCcgGGGCgcCCGa -3'
miRNA:   3'- ccUGAGCCC-------UGCCGGCG--UUUGaaGGU- -5'
5589 5' -55.7 NC_001806.1 + 52452 0.68 0.865357
Target:  5'- uGG-UUCGGGGCcgcccuGGCCGCGGAuCUgcUCCGc -3'
miRNA:   3'- -CCuGAGCCCUG------CCGGCGUUU-GA--AGGU- -5'
5589 5' -55.7 NC_001806.1 + 2854 0.68 0.865357
Target:  5'- cGGGCgCGGGGagggGGgCGCGGGCgUCCGa -3'
miRNA:   3'- -CCUGaGCCCUg---CCgGCGUUUGaAGGU- -5'
5589 5' -55.7 NC_001806.1 + 151544 0.68 0.865357
Target:  5'- uGGGCcCGGG-CGGCCGgGGGCggcgggggCCGc -3'
miRNA:   3'- -CCUGaGCCCuGCCGGCgUUUGaa------GGU- -5'
5589 5' -55.7 NC_001806.1 + 48913 0.68 0.865357
Target:  5'- gGGGCU-GGGGCGGCgGguAGCcUUCGc -3'
miRNA:   3'- -CCUGAgCCCUGCCGgCguUUGaAGGU- -5'
5589 5' -55.7 NC_001806.1 + 126875 0.68 0.85001
Target:  5'- aGGACggcgcCGGGGCucucggGGCCGCAGGac-CCAg -3'
miRNA:   3'- -CCUGa----GCCCUG------CCGGCGUUUgaaGGU- -5'
5589 5' -55.7 NC_001806.1 + 3365 0.68 0.848431
Target:  5'- cGGGCcccggccagcccCGGGACGGCCGcCAggUcgCCGu -3'
miRNA:   3'- -CCUGa-----------GCCCUGCCGGC-GUuuGaaGGU- -5'
5589 5' -55.7 NC_001806.1 + 141589 0.68 0.841232
Target:  5'- --cCUCGGGAuaacaguucuugaCGGCCGCcaAGACaUUCCGa -3'
miRNA:   3'- ccuGAGCCCU-------------GCCGGCG--UUUG-AAGGU- -5'
5589 5' -55.7 NC_001806.1 + 2994 0.68 0.840423
Target:  5'- gGGAggCGGcGGCGGCCGCcAGCgcgucggcggcgUCCGg -3'
miRNA:   3'- -CCUgaGCC-CUGCCGGCGuUUGa-----------AGGU- -5'
5589 5' -55.7 NC_001806.1 + 139210 0.68 0.833881
Target:  5'- cGGACgagcugCGGaGGCGGCaCGC-GACggCCAa -3'
miRNA:   3'- -CCUGa-----GCC-CUGCCG-GCGuUUGaaGGU- -5'
5589 5' -55.7 NC_001806.1 + 86054 0.68 0.830567
Target:  5'- cGGGCUCguccccuGGGGCGGCgGCGucuagcucgcggagGGCggCCAg -3'
miRNA:   3'- -CCUGAG-------CCCUGCCGgCGU--------------UUGaaGGU- -5'
5589 5' -55.7 NC_001806.1 + 15121 0.68 0.825541
Target:  5'- gGGACUaCGGGACGGuuGgGuuugUCCu -3'
miRNA:   3'- -CCUGA-GCCCUGCCggCgUuugaAGGu -5'
5589 5' -55.7 NC_001806.1 + 73992 0.69 0.817028
Target:  5'- cGGC-CGGGGCGGCCccGCAGgggGCU-CCGc -3'
miRNA:   3'- cCUGaGCCCUGCCGG--CGUU---UGAaGGU- -5'
5589 5' -55.7 NC_001806.1 + 42182 0.69 0.817028
Target:  5'- uGGuCUCGcGGAcguCGGCCGCAAuacgGCgcUCCAc -3'
miRNA:   3'- -CCuGAGC-CCU---GCCGGCGUU----UGa-AGGU- -5'
5589 5' -55.7 NC_001806.1 + 30029 0.69 0.817028
Target:  5'- cGGAggCGGGGCGGCCGaggggcCGGACgggCCc -3'
miRNA:   3'- -CCUgaGCCCUGCCGGC------GUUUGaa-GGu -5'
5589 5' -55.7 NC_001806.1 + 29464 0.69 0.817028
Target:  5'- aGGGC--GGGcACGGCCGUGGACUUUa- -3'
miRNA:   3'- -CCUGagCCC-UGCCGGCGUUUGAAGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.