miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5590 3' -53.5 NC_001806.1 + 140465 0.66 0.976199
Target:  5'- gCCCCCGAgGCCAgcauGACGUuaucucgguggagGCGCaUUGGc -3'
miRNA:   3'- -GGGGGCU-UGGUac--UUGCG-------------CGUG-AACC- -5'
5590 3' -53.5 NC_001806.1 + 76650 0.66 0.974936
Target:  5'- gUCCCGGcgACCGUGGccaagacgcuggaccAgGCGCGCUcGGc -3'
miRNA:   3'- gGGGGCU--UGGUACU---------------UgCGCGUGAaCC- -5'
5590 3' -53.5 NC_001806.1 + 98029 0.66 0.973892
Target:  5'- aCCgUGGGCCggcggGUGAGCGCGCGgaUGc -3'
miRNA:   3'- gGGgGCUUGG-----UACUUGCGCGUgaACc -5'
5590 3' -53.5 NC_001806.1 + 103688 0.66 0.973892
Target:  5'- cCCCCCGcccuCCGUGGAgGUGgGggUUUGGu -3'
miRNA:   3'- -GGGGGCuu--GGUACUUgCGCgU--GAACC- -5'
5590 3' -53.5 NC_001806.1 + 42593 0.66 0.973892
Target:  5'- gCCCCaCGAGCgAgcguagGGACGCGCcCUg-- -3'
miRNA:   3'- -GGGG-GCUUGgUa-----CUUGCGCGuGAacc -5'
5590 3' -53.5 NC_001806.1 + 141946 0.66 0.971143
Target:  5'- cCCCCCGuuuguuaaauCCAUGGgagggucgggggGCGCGgACgaGGa -3'
miRNA:   3'- -GGGGGCuu--------GGUACU------------UGCGCgUGaaCC- -5'
5590 3' -53.5 NC_001806.1 + 2830 0.66 0.971143
Target:  5'- gCCCCgGGGgCGUGGaggggggcGCGgGCGCggGGa -3'
miRNA:   3'- -GGGGgCUUgGUACU--------UGCgCGUGaaCC- -5'
5590 3' -53.5 NC_001806.1 + 10683 0.66 0.971143
Target:  5'- aCCCCCGGucgcagaugggGCCggGGGgGCGUACg--- -3'
miRNA:   3'- -GGGGGCU-----------UGGuaCUUgCGCGUGaacc -5'
5590 3' -53.5 NC_001806.1 + 65647 0.66 0.971143
Target:  5'- gCCCCGGcgGCCucccccugGGugGCuGCGCUgGGg -3'
miRNA:   3'- gGGGGCU--UGGua------CUugCG-CGUGAaCC- -5'
5590 3' -53.5 NC_001806.1 + 65223 0.66 0.971143
Target:  5'- cCCCCCGAauACCGcaGAGCG-GCGCcgUGu -3'
miRNA:   3'- -GGGGGCU--UGGUa-CUUGCgCGUGa-ACc -5'
5590 3' -53.5 NC_001806.1 + 75349 0.66 0.968192
Target:  5'- -aCUCGGuugGCCcUGGACGCGCGggUGGc -3'
miRNA:   3'- ggGGGCU---UGGuACUUGCGCGUgaACC- -5'
5590 3' -53.5 NC_001806.1 + 101330 0.66 0.968192
Target:  5'- uCUCCCGGggcaucggcuGCCAU--GCGCGCACccacagagacuUUGGu -3'
miRNA:   3'- -GGGGGCU----------UGGUAcuUGCGCGUG-----------AACC- -5'
5590 3' -53.5 NC_001806.1 + 151258 0.67 0.965033
Target:  5'- cCCCCCGGGCCc---ACGcCGgGCggUGGg -3'
miRNA:   3'- -GGGGGCUUGGuacuUGC-GCgUGa-ACC- -5'
5590 3' -53.5 NC_001806.1 + 118785 0.67 0.965033
Target:  5'- gCCCCGGACUcgGGACGgcCGCaaACUUccaGGu -3'
miRNA:   3'- gGGGGCUUGGuaCUUGC--GCG--UGAA---CC- -5'
5590 3' -53.5 NC_001806.1 + 113689 0.67 0.965033
Target:  5'- -aCCgGGACC-UGGugGCGCACg--- -3'
miRNA:   3'- ggGGgCUUGGuACUugCGCGUGaacc -5'
5590 3' -53.5 NC_001806.1 + 120109 0.67 0.965033
Target:  5'- gCCCUGGGCCAggccauccGGGC-CGCGCUUcaGGg -3'
miRNA:   3'- gGGGGCUUGGUa-------CUUGcGCGUGAA--CC- -5'
5590 3' -53.5 NC_001806.1 + 102562 0.67 0.965033
Target:  5'- aUCCCCGAACgugaCcgGAGCGCGguCg--- -3'
miRNA:   3'- -GGGGGCUUG----GuaCUUGCGCguGaacc -5'
5590 3' -53.5 NC_001806.1 + 52565 0.67 0.964044
Target:  5'- uCCCCCGGACgaCAUGGccaGCGgcccgggggggcauCGCGCggGGg -3'
miRNA:   3'- -GGGGGCUUG--GUACU---UGC--------------GCGUGaaCC- -5'
5590 3' -53.5 NC_001806.1 + 76237 0.67 0.96166
Target:  5'- cCCUCCGGGCCGacgcgcGGCGCGCGaucGGa -3'
miRNA:   3'- -GGGGGCUUGGUac----UUGCGCGUgaaCC- -5'
5590 3' -53.5 NC_001806.1 + 57405 0.67 0.96166
Target:  5'- aUCCCGcgccuuGGCCGUGAugGCaCGCggggUGGu -3'
miRNA:   3'- gGGGGC------UUGGUACUugCGcGUGa---ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.