Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5590 | 5' | -60.2 | NC_001806.1 | + | 117871 | 0.67 | 0.699473 |
Target: 5'- --gCGGGCGAUgUCGGCgGgGGCCg- -3' miRNA: 3'- cagGUCUGCUAgAGCCGgUgCCGGgc -5' |
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5590 | 5' | -60.2 | NC_001806.1 | + | 117361 | 0.69 | 0.552092 |
Target: 5'- uGUgCGGA-GGUC-CGGCCugGGCCgCGa -3' miRNA: 3'- -CAgGUCUgCUAGaGCCGGugCCGG-GC- -5' |
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5590 | 5' | -60.2 | NC_001806.1 | + | 115887 | 0.7 | 0.513861 |
Target: 5'- cUCCgcGGACGGauucgcUCUCGGUgcguCugGGCCCGa -3' miRNA: 3'- cAGG--UCUGCU------AGAGCCG----GugCCGGGC- -5' |
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5590 | 5' | -60.2 | NC_001806.1 | + | 115322 | 0.71 | 0.441027 |
Target: 5'- -cCCGGGCcuUCgCGGCCACGGCCa- -3' miRNA: 3'- caGGUCUGcuAGaGCCGGUGCCGGgc -5' |
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5590 | 5' | -60.2 | NC_001806.1 | + | 109237 | 0.66 | 0.747219 |
Target: 5'- -gCCGGGCGGgg-CGGaauCCugGGCCCc -3' miRNA: 3'- caGGUCUGCUagaGCC---GGugCCGGGc -5' |
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5590 | 5' | -60.2 | NC_001806.1 | + | 100757 | 0.67 | 0.679947 |
Target: 5'- -cCCGGacagcGCGAgCUCGGCCucgGCGGCCa- -3' miRNA: 3'- caGGUC-----UGCUaGAGCCGG---UGCCGGgc -5' |
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5590 | 5' | -60.2 | NC_001806.1 | + | 100629 | 0.67 | 0.656327 |
Target: 5'- uGUCCGG-CGAUCcCGGCCugccgccgccgcuCGGCCa- -3' miRNA: 3'- -CAGGUCuGCUAGaGCCGGu------------GCCGGgc -5' |
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5590 | 5' | -60.2 | NC_001806.1 | + | 100125 | 0.75 | 0.275239 |
Target: 5'- -gCCuGGCGGUCcgCGGCUAUGGCCCc -3' miRNA: 3'- caGGuCUGCUAGa-GCCGGUGCCGGGc -5' |
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5590 | 5' | -60.2 | NC_001806.1 | + | 98115 | 0.66 | 0.747219 |
Target: 5'- cGUCCAaaacucGAUGcgCaUCaGCuCGCGGCCCGg -3' miRNA: 3'- -CAGGU------CUGCuaG-AGcCG-GUGCCGGGC- -5' |
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5590 | 5' | -60.2 | NC_001806.1 | + | 91894 | 0.7 | 0.523324 |
Target: 5'- -aCCAGGCGGUCcccaCGGCCaugggGCGGCUgGa -3' miRNA: 3'- caGGUCUGCUAGa---GCCGG-----UGCCGGgC- -5' |
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5590 | 5' | -60.2 | NC_001806.1 | + | 91166 | 0.7 | 0.532854 |
Target: 5'- -gCCAGGaca---CGGCCGCGGCCCGc -3' miRNA: 3'- caGGUCUgcuagaGCCGGUGCCGGGC- -5' |
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5590 | 5' | -60.2 | NC_001806.1 | + | 89517 | 0.73 | 0.348995 |
Target: 5'- aUCCGGGCGGcgagCUgcugcgcggcgcccCGGCCgGCGGCCCGg -3' miRNA: 3'- cAGGUCUGCUa---GA--------------GCCGG-UGCCGGGC- -5' |
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5590 | 5' | -60.2 | NC_001806.1 | + | 87718 | 0.72 | 0.39859 |
Target: 5'- uGUCCuucaGGACGGcUUCGGCCACGGCg-- -3' miRNA: 3'- -CAGG----UCUGCUaGAGCCGGUGCCGggc -5' |
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5590 | 5' | -60.2 | NC_001806.1 | + | 79520 | 0.66 | 0.756519 |
Target: 5'- -aCCGGGCG-UCcCGGCCgaaagcacGCGGCCgGc -3' miRNA: 3'- caGGUCUGCuAGaGCCGG--------UGCCGGgC- -5' |
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5590 | 5' | -60.2 | NC_001806.1 | + | 78213 | 0.68 | 0.650402 |
Target: 5'- -gCCAG-CGuUUUCGGCCGgaGGCCCu -3' miRNA: 3'- caGGUCuGCuAGAGCCGGUg-CCGGGc -5' |
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5590 | 5' | -60.2 | NC_001806.1 | + | 77379 | 0.69 | 0.552092 |
Target: 5'- -gCCAGACGggCgcgggcgcggCGGCCGCG-CCCGc -3' miRNA: 3'- caGGUCUGCuaGa---------GCCGGUGCcGGGC- -5' |
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5590 | 5' | -60.2 | NC_001806.1 | + | 75240 | 0.66 | 0.765715 |
Target: 5'- cGUCCuGGuCGAcg-CGGUgACGGCCCu -3' miRNA: 3'- -CAGGuCU-GCUagaGCCGgUGCCGGGc -5' |
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5590 | 5' | -60.2 | NC_001806.1 | + | 70039 | 0.7 | 0.501665 |
Target: 5'- -cCCGGuCGAguucgcccugcgugUgUUGGCCugGGCCCGg -3' miRNA: 3'- caGGUCuGCU--------------AgAGCCGGugCCGGGC- -5' |
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5590 | 5' | -60.2 | NC_001806.1 | + | 68257 | 0.68 | 0.639527 |
Target: 5'- --gCGGACGAcccggcgUUUCuGGCCACGGCCa- -3' miRNA: 3'- cagGUCUGCU-------AGAG-CCGGUGCCGGgc -5' |
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5590 | 5' | -60.2 | NC_001806.1 | + | 67891 | 0.69 | 0.581319 |
Target: 5'- aUCCGGACaAUCccccgGGCCugGGUCCGc -3' miRNA: 3'- cAGGUCUGcUAGag---CCGGugCCGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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