miRNA display CGI


Results 41 - 60 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5590 5' -60.2 NC_001806.1 + 89517 0.73 0.348995
Target:  5'- aUCCGGGCGGcgagCUgcugcgcggcgcccCGGCCgGCGGCCCGg -3'
miRNA:   3'- cAGGUCUGCUa---GA--------------GCCGG-UGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 56638 0.74 0.329128
Target:  5'- -gCCGGuGCGAccUCaUCGGCCgGCGGCCCGu -3'
miRNA:   3'- caGGUC-UGCU--AG-AGCCGG-UGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 100125 0.75 0.275239
Target:  5'- -gCCuGGCGGUCcgCGGCUAUGGCCCc -3'
miRNA:   3'- caGGuCUGCUAGa-GCCGGUGCCGGGc -5'
5590 5' -60.2 NC_001806.1 + 67777 0.75 0.275239
Target:  5'- cUCCGGugGGUUgugUUGGCCGacUGGCCCGg -3'
miRNA:   3'- cAGGUCugCUAG---AGCCGGU--GCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 52568 0.76 0.228642
Target:  5'- -cCCGGACGA-CaUGGCCAgCGGCCCGg -3'
miRNA:   3'- caGGUCUGCUaGaGCCGGU-GCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 21394 0.72 0.423741
Target:  5'- cGUCCGGACGAUCcCGacgcccgaccCCGCGGCCUc -3'
miRNA:   3'- -CAGGUCUGCUAGaGCc---------GGUGCCGGGc -5'
5590 5' -60.2 NC_001806.1 + 115322 0.71 0.441027
Target:  5'- -cCCGGGCcuUCgCGGCCACGGCCa- -3'
miRNA:   3'- caGGUCUGcuAGaGCCGGUGCCGGgc -5'
5590 5' -60.2 NC_001806.1 + 1730 0.69 0.581319
Target:  5'- cGUCCAG-CGc---CGGCagCACGGCCCGg -3'
miRNA:   3'- -CAGGUCuGCuagaGCCG--GUGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 131863 0.69 0.56179
Target:  5'- cGUCCAGGCcGUCguggCGGCCGCccgcGCCgCGa -3'
miRNA:   3'- -CAGGUCUGcUAGa---GCCGGUGc---CGG-GC- -5'
5590 5' -60.2 NC_001806.1 + 117361 0.69 0.552092
Target:  5'- uGUgCGGA-GGUC-CGGCCugGGCCgCGa -3'
miRNA:   3'- -CAgGUCUgCUAGaGCCGGugCCGG-GC- -5'
5590 5' -60.2 NC_001806.1 + 77379 0.69 0.552092
Target:  5'- -gCCAGACGggCgcgggcgcggCGGCCGCG-CCCGc -3'
miRNA:   3'- caGGUCUGCuaGa---------GCCGGUGCcGGGC- -5'
5590 5' -60.2 NC_001806.1 + 24678 0.69 0.552092
Target:  5'- -gCgAGGCGGUgCgcgcCGGCC-CGGCCCGg -3'
miRNA:   3'- caGgUCUGCUA-Ga---GCCGGuGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 126069 0.7 0.532854
Target:  5'- uGUUCGGGCGggUgaaCGaGCCgACGGCCCGa -3'
miRNA:   3'- -CAGGUCUGCuaGa--GC-CGG-UGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 91166 0.7 0.532854
Target:  5'- -gCCAGGaca---CGGCCGCGGCCCGc -3'
miRNA:   3'- caGGUCUgcuagaGCCGGUGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 150865 0.7 0.532854
Target:  5'- -gCCGGGCcggCUCcgcgGGCCAgGGCCCGg -3'
miRNA:   3'- caGGUCUGcuaGAG----CCGGUgCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 119897 0.7 0.523324
Target:  5'- uGUCCucGGCGc---UGGCCACGGCCCu -3'
miRNA:   3'- -CAGGu-CUGCuagaGCCGGUGCCGGGc -5'
5590 5' -60.2 NC_001806.1 + 91894 0.7 0.523324
Target:  5'- -aCCAGGCGGUCcccaCGGCCaugggGCGGCUgGa -3'
miRNA:   3'- caGGUCUGCUAGa---GCCGG-----UGCCGGgC- -5'
5590 5' -60.2 NC_001806.1 + 115887 0.7 0.513861
Target:  5'- cUCCgcGGACGGauucgcUCUCGGUgcguCugGGCCCGa -3'
miRNA:   3'- cAGG--UCUGCU------AGAGCCG----GugCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 70039 0.7 0.501665
Target:  5'- -cCCGGuCGAguucgcccugcgugUgUUGGCCugGGCCCGg -3'
miRNA:   3'- caGGUCuGCU--------------AgAGCCGGugCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 5596 0.7 0.485912
Target:  5'- -gCCGGGgGcccgUGGCCGCGGCCCGu -3'
miRNA:   3'- caGGUCUgCuagaGCCGGUGCCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.