miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5590 5' -60.2 NC_001806.1 + 3087 0.67 0.699473
Target:  5'- gGUCCGcGGCGGcggCGGCCGCGgaGCUCGg -3'
miRNA:   3'- -CAGGU-CUGCUagaGCCGGUGC--CGGGC- -5'
5590 5' -60.2 NC_001806.1 + 151673 0.67 0.699473
Target:  5'- uGUCUAacuCGcuaGUCUCGGCCGggggGGCCCGg -3'
miRNA:   3'- -CAGGUcu-GC---UAGAGCCGGUg---CCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 24834 0.67 0.679947
Target:  5'- -gCUGGGC---CUCGGCCACGGgCCGc -3'
miRNA:   3'- caGGUCUGcuaGAGCCGGUGCCgGGC- -5'
5590 5' -60.2 NC_001806.1 + 100757 0.67 0.679947
Target:  5'- -cCCGGacagcGCGAgCUCGGCCucgGCGGCCa- -3'
miRNA:   3'- caGGUC-----UGCUaGAGCCGG---UGCCGGgc -5'
5590 5' -60.2 NC_001806.1 + 10090 0.67 0.669141
Target:  5'- -gCCAGGCGAgacguccacguacUCgCGGCgCACGGCgCGu -3'
miRNA:   3'- caGGUCUGCU-------------AGaGCCG-GUGCCGgGC- -5'
5590 5' -60.2 NC_001806.1 + 126691 0.67 0.660274
Target:  5'- cUCCGGG-GAUCUgGuccGCCGCGaGCCCGu -3'
miRNA:   3'- cAGGUCUgCUAGAgC---CGGUGC-CGGGC- -5'
5590 5' -60.2 NC_001806.1 + 100629 0.67 0.656327
Target:  5'- uGUCCGG-CGAUCcCGGCCugccgccgccgcuCGGCCa- -3'
miRNA:   3'- -CAGGUCuGCUAGaGCCGGu------------GCCGGgc -5'
5590 5' -60.2 NC_001806.1 + 78213 0.68 0.650402
Target:  5'- -gCCAG-CGuUUUCGGCCGgaGGCCCu -3'
miRNA:   3'- caGGUCuGCuAGAGCCGGUg-CCGGGc -5'
5590 5' -60.2 NC_001806.1 + 133725 0.68 0.640516
Target:  5'- cGUCCccGCGAUCUauacCCGCGGCCCc -3'
miRNA:   3'- -CAGGucUGCUAGAgcc-GGUGCCGGGc -5'
5590 5' -60.2 NC_001806.1 + 68257 0.68 0.639527
Target:  5'- --gCGGACGAcccggcgUUUCuGGCCACGGCCa- -3'
miRNA:   3'- cagGUCUGCU-------AGAG-CCGGUGCCGGgc -5'
5590 5' -60.2 NC_001806.1 + 56609 0.68 0.630625
Target:  5'- -cCCAGACGuUUUCgGGCCGCGcGaCCCu -3'
miRNA:   3'- caGGUCUGCuAGAG-CCGGUGC-C-GGGc -5'
5590 5' -60.2 NC_001806.1 + 134913 0.68 0.630625
Target:  5'- -aCCAGgcuGCGGUCccCGGCgAUGGCCUGc -3'
miRNA:   3'- caGGUC---UGCUAGa-GCCGgUGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 66800 0.68 0.620734
Target:  5'- -gCCGGGagGAUCaCGGCCGagcggggcCGGCCCGg -3'
miRNA:   3'- caGGUCUg-CUAGaGCCGGU--------GCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 144572 0.68 0.620734
Target:  5'- uUCCGGGCGcGUC-CGgguGCCGCGGCUCu -3'
miRNA:   3'- cAGGUCUGC-UAGaGC---CGGUGCCGGGc -5'
5590 5' -60.2 NC_001806.1 + 58327 0.68 0.610851
Target:  5'- cGUCUuGGCGuuggCGGCCGCcuGGCCCGc -3'
miRNA:   3'- -CAGGuCUGCuagaGCCGGUG--CCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 67891 0.69 0.581319
Target:  5'- aUCCGGACaAUCccccgGGCCugGGUCCGc -3'
miRNA:   3'- cAGGUCUGcUAGag---CCGGugCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 1730 0.69 0.581319
Target:  5'- cGUCCAG-CGc---CGGCagCACGGCCCGg -3'
miRNA:   3'- -CAGGUCuGCuagaGCCG--GUGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 131863 0.69 0.56179
Target:  5'- cGUCCAGGCcGUCguggCGGCCGCccgcGCCgCGa -3'
miRNA:   3'- -CAGGUCUGcUAGa---GCCGGUGc---CGG-GC- -5'
5590 5' -60.2 NC_001806.1 + 24678 0.69 0.552092
Target:  5'- -gCgAGGCGGUgCgcgcCGGCC-CGGCCCGg -3'
miRNA:   3'- caGgUCUGCUA-Ga---GCCGGuGCCGGGC- -5'
5590 5' -60.2 NC_001806.1 + 117361 0.69 0.552092
Target:  5'- uGUgCGGA-GGUC-CGGCCugGGCCgCGa -3'
miRNA:   3'- -CAgGUCUgCUAGaGCCGGugCCGG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.