miRNA display CGI


Results 21 - 40 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5592 3' -62.6 NC_001806.1 + 57027 0.67 0.55704
Target:  5'- aGGCAcuGgGugGCCGGgCCCGG-GGC-Cg -3'
miRNA:   3'- -CUGU--CgCugCGGCCaGGGCCuCCGaG- -5'
5592 3' -62.6 NC_001806.1 + 103460 0.67 0.547452
Target:  5'- cACAGCGgaccggcgucugGCGUgGGaaaaCCCGGGGGCUg -3'
miRNA:   3'- cUGUCGC------------UGCGgCCa---GGGCCUCCGAg -5'
5592 3' -62.6 NC_001806.1 + 44831 0.67 0.547452
Target:  5'- cACGuCGAccCGCagGGUCCCGGGGGCa- -3'
miRNA:   3'- cUGUcGCU--GCGg-CCAGGGCCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 20605 0.67 0.546495
Target:  5'- uGGCAGaUGGCGCggaugggCGGggCCGGGGGUUCg -3'
miRNA:   3'- -CUGUC-GCUGCG-------GCCagGGCCUCCGAG- -5'
5592 3' -62.6 NC_001806.1 + 99692 0.67 0.544585
Target:  5'- gGGCAuGgGACGCCGGaCCCuggggaggaccguaGGGGGCg- -3'
miRNA:   3'- -CUGU-CgCUGCGGCCaGGG--------------CCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 62303 0.67 0.537915
Target:  5'- cGACAGUGGCGgCGGgCCUggcgcggaGGGGGUUUg -3'
miRNA:   3'- -CUGUCGCUGCgGCCaGGG--------CCUCCGAG- -5'
5592 3' -62.6 NC_001806.1 + 65451 0.67 0.528437
Target:  5'- --gGGgGAUGCCgcggcccccgGGUCCUGGGGGCg- -3'
miRNA:   3'- cugUCgCUGCGG----------CCAGGGCCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 15334 0.67 0.528437
Target:  5'- -uCGGUGGUGCCGGUCUgggucauguUGGGGGCUUc -3'
miRNA:   3'- cuGUCGCUGCGGCCAGG---------GCCUCCGAG- -5'
5592 3' -62.6 NC_001806.1 + 103817 0.68 0.519021
Target:  5'- cGGCGGCGAcgggcuCGCUgGGUCCU--AGGCUCa -3'
miRNA:   3'- -CUGUCGCU------GCGG-CCAGGGccUCCGAG- -5'
5592 3' -62.6 NC_001806.1 + 4347 0.68 0.519021
Target:  5'- -cCGGCGGCGCucgaugCGGcCCgCGGAGGC-Cg -3'
miRNA:   3'- cuGUCGCUGCG------GCCaGG-GCCUCCGaG- -5'
5592 3' -62.6 NC_001806.1 + 13643 0.68 0.509672
Target:  5'- uACA-CG-CGCCGGaccCCCGGAGGgUCg -3'
miRNA:   3'- cUGUcGCuGCGGCCa--GGGCCUCCgAG- -5'
5592 3' -62.6 NC_001806.1 + 71890 0.68 0.500395
Target:  5'- ---cGCGACGuCCuGUCCgCGGAGGCcaUCg -3'
miRNA:   3'- cuguCGCUGC-GGcCAGG-GCCUCCG--AG- -5'
5592 3' -62.6 NC_001806.1 + 147687 0.68 0.500395
Target:  5'- gGGCcGgGGCGCgGGggcgggcCCCGGAGGCg- -3'
miRNA:   3'- -CUGuCgCUGCGgCCa------GGGCCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 5093 0.68 0.500395
Target:  5'- gGGCGGCGGCccGUCGGUggggCCCGGGGaGC-Cg -3'
miRNA:   3'- -CUGUCGCUG--CGGCCA----GGGCCUC-CGaG- -5'
5592 3' -62.6 NC_001806.1 + 49640 0.68 0.500395
Target:  5'- gGAC-GCG-UGCCGGgCCCGGAG-CUCc -3'
miRNA:   3'- -CUGuCGCuGCGGCCaGGGCCUCcGAG- -5'
5592 3' -62.6 NC_001806.1 + 2812 0.68 0.491192
Target:  5'- gGGCGGgGGCGggcUCGGgcCCCGGGGGCg- -3'
miRNA:   3'- -CUGUCgCUGC---GGCCa-GGGCCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 151298 0.68 0.482069
Target:  5'- gGGCGGCGGCGgUGGg-CCGGGccucuggcgccGGCUCg -3'
miRNA:   3'- -CUGUCGCUGCgGCCagGGCCU-----------CCGAG- -5'
5592 3' -62.6 NC_001806.1 + 126611 0.68 0.482069
Target:  5'- aAUAGCGGCGuuG-UCUCGGAGGUg- -3'
miRNA:   3'- cUGUCGCUGCggCcAGGGCCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 38394 0.68 0.482069
Target:  5'- cGCGGCGGCucuccGCCGG-CUCGGGGGggucCUCg -3'
miRNA:   3'- cUGUCGCUG-----CGGCCaGGGCCUCC----GAG- -5'
5592 3' -62.6 NC_001806.1 + 3133 0.68 0.482069
Target:  5'- cGGCAGCGcgGgGCCcagGGcCCCGGcgaccAGGCUCa -3'
miRNA:   3'- -CUGUCGC--UgCGG---CCaGGGCC-----UCCGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.