Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5592 | 5' | -53.3 | NC_001806.1 | + | 37794 | 0.7 | 0.833418 |
Target: 5'- -gGGGCGCgGGGGUCCGCGgGCGgGg- -3' miRNA: 3'- caCUUGCG-CCCUAGGUGCaUGUgCau -5' |
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5592 | 5' | -53.3 | NC_001806.1 | + | 50327 | 0.7 | 0.824854 |
Target: 5'- --uGACGCGGGAggccgccuUCCugGgGCGCGUGc -3' miRNA: 3'- cacUUGCGCCCU--------AGGugCaUGUGCAU- -5' |
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5592 | 5' | -53.3 | NC_001806.1 | + | 11318 | 0.71 | 0.816109 |
Target: 5'- gGUGGguguCGUGGGGUCCACGggGgGCGUc -3' miRNA: 3'- -CACUu---GCGCCCUAGGUGCa-UgUGCAu -5' |
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5592 | 5' | -53.3 | NC_001806.1 | + | 38881 | 0.71 | 0.797188 |
Target: 5'- aUGGGCGgggucguUGGGAUCCAgGcUACACGUGg -3' miRNA: 3'- cACUUGC-------GCCCUAGGUgC-AUGUGCAU- -5' |
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5592 | 5' | -53.3 | NC_001806.1 | + | 40567 | 0.71 | 0.788864 |
Target: 5'- cGUGAAaauggaagcgcCGCGGG-UCgGCGUGCGCGg- -3' miRNA: 3'- -CACUU-----------GCGCCCuAGgUGCAUGUGCau -5' |
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5592 | 5' | -53.3 | NC_001806.1 | + | 64733 | 0.72 | 0.720609 |
Target: 5'- aUGAGCGCGGG-UUCGCGguuCACGg- -3' miRNA: 3'- cACUUGCGCCCuAGGUGCau-GUGCau -5' |
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5592 | 5' | -53.3 | NC_001806.1 | + | 139966 | 0.73 | 0.689978 |
Target: 5'- -cGAACGCGGGugggacgCCcauAUGUACGCGUAu -3' miRNA: 3'- caCUUGCGCCCua-----GG---UGCAUGUGCAU- -5' |
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5592 | 5' | -53.3 | NC_001806.1 | + | 118000 | 1.07 | 0.00707 |
Target: 5'- cGUGAACGCGGGAUCCACGUACACGUAc -3' miRNA: 3'- -CACUUGCGCCCUAGGUGCAUGUGCAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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