miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5593 3' -55.7 NC_001806.1 + 108855 0.66 0.915426
Target:  5'- -cGGCUGUgg-UUCC---GGCCGCCAg -3'
miRNA:   3'- gaCCGACGauaAAGGgagCUGGCGGU- -5'
5593 3' -55.7 NC_001806.1 + 105923 0.66 0.915426
Target:  5'- gUGGCUGCcaaacaCCCcCGACCcCCAa -3'
miRNA:   3'- gACCGACGauaaa-GGGaGCUGGcGGU- -5'
5593 3' -55.7 NC_001806.1 + 134644 0.66 0.915426
Target:  5'- -aGGCUGUgcacGUggUCCUCGuuggccgucaggACCGCCAc -3'
miRNA:   3'- gaCCGACGa---UAaaGGGAGC------------UGGCGGU- -5'
5593 3' -55.7 NC_001806.1 + 31098 0.66 0.914248
Target:  5'- -cGGCUGCgggccgcggUCCC-CGgcuggaGCCGCCGc -3'
miRNA:   3'- gaCCGACGauaa-----AGGGaGC------UGGCGGU- -5'
5593 3' -55.7 NC_001806.1 + 79071 0.66 0.90321
Target:  5'- gUGGCgggcgGCgaggacgUCCUCG-CCGCCAg -3'
miRNA:   3'- gACCGa----CGauaaa--GGGAGCuGGCGGU- -5'
5593 3' -55.7 NC_001806.1 + 94945 0.66 0.896744
Target:  5'- uCUGGCUcGCg---UCCggCGACCGCg- -3'
miRNA:   3'- -GACCGA-CGauaaAGGgaGCUGGCGgu -5'
5593 3' -55.7 NC_001806.1 + 118742 0.66 0.890043
Target:  5'- cCUGGCggccGCgggaaUCCCcUGGCCGCCc -3'
miRNA:   3'- -GACCGa---CGauaa-AGGGaGCUGGCGGu -5'
5593 3' -55.7 NC_001806.1 + 19126 0.66 0.890043
Target:  5'- -gGGCUGC-GUUUCCCggguaGACCGgacCCGc -3'
miRNA:   3'- gaCCGACGaUAAAGGGag---CUGGC---GGU- -5'
5593 3' -55.7 NC_001806.1 + 107322 0.66 0.88311
Target:  5'- -gGGC-GCUAUUUUacgCCUCGGCUGUCc -3'
miRNA:   3'- gaCCGaCGAUAAAG---GGAGCUGGCGGu -5'
5593 3' -55.7 NC_001806.1 + 101948 0.67 0.875951
Target:  5'- -aGGCcgggaaacaGCUGggUCagCUCGACCGCCGg -3'
miRNA:   3'- gaCCGa--------CGAUaaAGg-GAGCUGGCGGU- -5'
5593 3' -55.7 NC_001806.1 + 129655 0.67 0.860973
Target:  5'- -aGGCUGCccugcgCCCgcccgGGCCGCCGa -3'
miRNA:   3'- gaCCGACGauaaa-GGGag---CUGGCGGU- -5'
5593 3' -55.7 NC_001806.1 + 134916 0.68 0.828544
Target:  5'- -aGGCUGCgg--UCCCcggCGAUgGCCu -3'
miRNA:   3'- gaCCGACGauaaAGGGa--GCUGgCGGu -5'
5593 3' -55.7 NC_001806.1 + 23581 0.68 0.819964
Target:  5'- -cGGCgGCg----CCCgCGGCCGCCGc -3'
miRNA:   3'- gaCCGaCGauaaaGGGaGCUGGCGGU- -5'
5593 3' -55.7 NC_001806.1 + 134871 0.69 0.783985
Target:  5'- -aGGCggagcagcgucUGCUGgcuaaUCgCCUCGGCCGCCu -3'
miRNA:   3'- gaCCG-----------ACGAUaa---AG-GGAGCUGGCGGu -5'
5593 3' -55.7 NC_001806.1 + 77774 0.69 0.765127
Target:  5'- -cGGCUucaGCUGg--CCCUCagcgacgcccaGGCCGCCAa -3'
miRNA:   3'- gaCCGA---CGAUaaaGGGAG-----------CUGGCGGU- -5'
5593 3' -55.7 NC_001806.1 + 113849 0.71 0.675396
Target:  5'- -cGGC-GCgcgg-CCCUgGACCGCCAu -3'
miRNA:   3'- gaCCGaCGauaaaGGGAgCUGGCGGU- -5'
5593 3' -55.7 NC_001806.1 + 4144 0.71 0.665122
Target:  5'- -gGGCgGCUGUcgCCCa-GGCCGCCGu -3'
miRNA:   3'- gaCCGaCGAUAaaGGGagCUGGCGGU- -5'
5593 3' -55.7 NC_001806.1 + 135550 0.71 0.623842
Target:  5'- -cGGCUGCcgcaUCCaccggucacggaCUCGGCCGCCAg -3'
miRNA:   3'- gaCCGACGauaaAGG------------GAGCUGGCGGU- -5'
5593 3' -55.7 NC_001806.1 + 149954 0.72 0.603207
Target:  5'- cCUGGCUGCUGcgUCUCgcucCGAgUGCCGa -3'
miRNA:   3'- -GACCGACGAUaaAGGGa---GCUgGCGGU- -5'
5593 3' -55.7 NC_001806.1 + 117780 1.08 0.003085
Target:  5'- cCUGGCUGCUAUUUCCCUCGACCGCCAc -3'
miRNA:   3'- -GACCGACGAUAAAGGGAGCUGGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.