miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5593 5' -60.4 NC_001806.1 + 10998 0.66 0.761463
Target:  5'- cCGCGAuccAUGUCCCGGGGauaGCA--GCCg -3'
miRNA:   3'- -GCGCUu--UGCGGGGCCCUa--CGUccCGG- -5'
5593 5' -60.4 NC_001806.1 + 136678 0.66 0.761463
Target:  5'- gGCGAAccaGCCgUUGGGGcUGCAgaccgcGGGCCg -3'
miRNA:   3'- gCGCUUug-CGG-GGCCCU-ACGU------CCCGG- -5'
5593 5' -60.4 NC_001806.1 + 3947 0.66 0.760545
Target:  5'- aGCGccACGuCCCCGGGGaccacgcGCGGGuucuggaGCCa -3'
miRNA:   3'- gCGCuuUGC-GGGGCCCUa------CGUCC-------CGG- -5'
5593 5' -60.4 NC_001806.1 + 118750 0.66 0.760545
Target:  5'- cCGCGGGAaucCCCUGGccgcccuGAUGCGcGGCCg -3'
miRNA:   3'- -GCGCUUUgc-GGGGCC-------CUACGUcCCGG- -5'
5593 5' -60.4 NC_001806.1 + 41803 0.66 0.758706
Target:  5'- gGCGGAguccACgGCCCCGcaauacgcgggggcGGgcGuCAGGGCCc -3'
miRNA:   3'- gCGCUU----UG-CGGGGC--------------CCuaC-GUCCCGG- -5'
5593 5' -60.4 NC_001806.1 + 77012 0.66 0.757785
Target:  5'- uGCGAGcagcuucGCGCCCUGcaGGAcaccaccaacacugUGuCGGGGCUg -3'
miRNA:   3'- gCGCUU-------UGCGGGGC--CCU--------------AC-GUCCCGG- -5'
5593 5' -60.4 NC_001806.1 + 82210 0.66 0.752237
Target:  5'- gGCGuaaucGCGcCCCCGGGGgcguUGUGuGGGCg -3'
miRNA:   3'- gCGCuu---UGC-GGGGCCCU----ACGU-CCCGg -5'
5593 5' -60.4 NC_001806.1 + 27151 0.66 0.752237
Target:  5'- cCGCGGAGC-UCCCGGGAgcuccGCAccaaGCCg -3'
miRNA:   3'- -GCGCUUUGcGGGGCCCUa----CGUcc--CGG- -5'
5593 5' -60.4 NC_001806.1 + 133446 0.66 0.752237
Target:  5'- aCGCGAcACGCUgCGacGGGUcCuGGGCCu -3'
miRNA:   3'- -GCGCUuUGCGGgGC--CCUAcGuCCCGG- -5'
5593 5' -60.4 NC_001806.1 + 150475 0.66 0.752237
Target:  5'- nCGCGGGAauUGCCggaagCGGGAaggGCggccGGGGCCg -3'
miRNA:   3'- -GCGCUUU--GCGGg----GCCCUa--CG----UCCCGG- -5'
5593 5' -60.4 NC_001806.1 + 132675 0.66 0.742912
Target:  5'- aCGCc--GCGCuCCUGGGGgccugGCccgcggugGGGGCCa -3'
miRNA:   3'- -GCGcuuUGCG-GGGCCCUa----CG--------UCCCGG- -5'
5593 5' -60.4 NC_001806.1 + 151276 0.66 0.742912
Target:  5'- gGCGGugGGgGCCggggCCGGGggGCGgcggcgguGGGCCg -3'
miRNA:   3'- gCGCU--UUgCGG----GGCCCuaCGU--------CCCGG- -5'
5593 5' -60.4 NC_001806.1 + 2671 0.66 0.742912
Target:  5'- cCGCG-GGCGCCgCCGugugGCuGGGCCc -3'
miRNA:   3'- -GCGCuUUGCGG-GGCccuaCGuCCCGG- -5'
5593 5' -60.4 NC_001806.1 + 1846 0.66 0.742912
Target:  5'- aGCGGcGGCGCgUCGGGGUaCAGGcGCg -3'
miRNA:   3'- gCGCU-UUGCGgGGCCCUAcGUCC-CGg -5'
5593 5' -60.4 NC_001806.1 + 74637 0.66 0.742912
Target:  5'- cCGagGAAGCGCUgCGGcagGCGcGGGCCa -3'
miRNA:   3'- -GCg-CUUUGCGGgGCCcuaCGU-CCCGG- -5'
5593 5' -60.4 NC_001806.1 + 148777 0.66 0.741974
Target:  5'- gGgGggGCGCCCCcgcaacugccGGGGUcuuccucGCGGGGg- -3'
miRNA:   3'- gCgCuuUGCGGGG----------CCCUA-------CGUCCCgg -5'
5593 5' -60.4 NC_001806.1 + 115537 0.66 0.741974
Target:  5'- aGCGAcguacaguuuaAGCGCCCCccGGGGUGCcgcgaacucguggAGGaCCc -3'
miRNA:   3'- gCGCU-----------UUGCGGGG--CCCUACG-------------UCCcGG- -5'
5593 5' -60.4 NC_001806.1 + 65637 0.66 0.740096
Target:  5'- gGCGAGAgggGCCCCggcggccucccccuGGGuggcUGCgcuGGGGCCg -3'
miRNA:   3'- gCGCUUUg--CGGGG--------------CCCu---ACG---UCCCGG- -5'
5593 5' -60.4 NC_001806.1 + 4376 0.66 0.733497
Target:  5'- cCGCGggGguccucgccgcCGCCCgGGGcuuggGCGcGGCCu -3'
miRNA:   3'- -GCGCuuU-----------GCGGGgCCCua---CGUcCCGG- -5'
5593 5' -60.4 NC_001806.1 + 58972 0.66 0.733497
Target:  5'- aGUucGGCGCCCUGcaGGAccaccugGCAGGGCg -3'
miRNA:   3'- gCGcuUUGCGGGGC--CCUa------CGUCCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.