miRNA display CGI


Results 21 - 40 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5593 5' -60.4 NC_001806.1 + 83789 0.66 0.733497
Target:  5'- -uCGGAACcuugGCCuCCGGGGgcgaggaggggGCGGGGUCg -3'
miRNA:   3'- gcGCUUUG----CGG-GGCCCUa----------CGUCCCGG- -5'
5593 5' -60.4 NC_001806.1 + 24877 0.66 0.733497
Target:  5'- gGCGggG-GCCgUGGaGGUGCugGGGGCg -3'
miRNA:   3'- gCGCuuUgCGGgGCC-CUACG--UCCCGg -5'
5593 5' -60.4 NC_001806.1 + 109411 0.66 0.733497
Target:  5'- gGCGAuGgGUCgUGGGgcGCGGcGGCCc -3'
miRNA:   3'- gCGCUuUgCGGgGCCCuaCGUC-CCGG- -5'
5593 5' -60.4 NC_001806.1 + 100378 0.66 0.733497
Target:  5'- aGCucc-CGUCgCCGGGcgGCgcgGGGGCCg -3'
miRNA:   3'- gCGcuuuGCGG-GGCCCuaCG---UCCCGG- -5'
5593 5' -60.4 NC_001806.1 + 4376 0.66 0.733497
Target:  5'- cCGCGggGguccucgccgcCGCCCgGGGcuuggGCGcGGCCu -3'
miRNA:   3'- -GCGCuuU-----------GCGGGgCCCua---CGUcCCGG- -5'
5593 5' -60.4 NC_001806.1 + 19568 0.66 0.724
Target:  5'- gGCGcaaAAGCGCCUgGGGAaaUGUc-GGCCa -3'
miRNA:   3'- gCGC---UUUGCGGGgCCCU--ACGucCCGG- -5'
5593 5' -60.4 NC_001806.1 + 15763 0.66 0.724
Target:  5'- gGUGAGGCGCgaUUCuGGAUGCGGGGa- -3'
miRNA:   3'- gCGCUUUGCG--GGGcCCUACGUCCCgg -5'
5593 5' -60.4 NC_001806.1 + 115235 0.66 0.724
Target:  5'- gGgGAcGCGCCgCCGGGGgcguuuacGCGGGGg- -3'
miRNA:   3'- gCgCUuUGCGG-GGCCCUa-------CGUCCCgg -5'
5593 5' -60.4 NC_001806.1 + 20650 0.66 0.724
Target:  5'- cCGCGGccacgggcccccGGCGUgCCGGcgucGggGCGGGGUCg -3'
miRNA:   3'- -GCGCU------------UUGCGgGGCC----CuaCGUCCCGG- -5'
5593 5' -60.4 NC_001806.1 + 5866 0.66 0.724
Target:  5'- cCGCcGGACGCCgggaccaaCGGGAcgGCgggcggcccaAGGGCCg -3'
miRNA:   3'- -GCGcUUUGCGGg-------GCCCUa-CG----------UCCCGG- -5'
5593 5' -60.4 NC_001806.1 + 77114 0.66 0.724
Target:  5'- gGCGccaaGAGCGCCgagCGGGc--CGGGGCCg -3'
miRNA:   3'- gCGC----UUUGCGGg--GCCCuacGUCCCGG- -5'
5593 5' -60.4 NC_001806.1 + 121656 0.66 0.724
Target:  5'- uGCGu--CGCCCCGuGucUGU-GGGCCa -3'
miRNA:   3'- gCGCuuuGCGGGGC-CcuACGuCCCGG- -5'
5593 5' -60.4 NC_001806.1 + 9783 0.66 0.71443
Target:  5'- gGgGAGGgGCCCCGacgugcGGGUgGguGGGCUc -3'
miRNA:   3'- gCgCUUUgCGGGGC------CCUA-CguCCCGG- -5'
5593 5' -60.4 NC_001806.1 + 46094 0.66 0.71443
Target:  5'- gGCGGuuuugucCGgCCCGGGGccUGCGcGGGCg -3'
miRNA:   3'- gCGCUuu-----GCgGGGCCCU--ACGU-CCCGg -5'
5593 5' -60.4 NC_001806.1 + 23925 0.66 0.71443
Target:  5'- gGCGAGGa--CCUGgccGGcgGCGGGGCCu -3'
miRNA:   3'- gCGCUUUgcgGGGC---CCuaCGUCCCGG- -5'
5593 5' -60.4 NC_001806.1 + 150106 0.66 0.71443
Target:  5'- cCGCGggGCgGCCCCGuccc-CGGGGaCCa -3'
miRNA:   3'- -GCGCuuUG-CGGGGCccuacGUCCC-GG- -5'
5593 5' -60.4 NC_001806.1 + 103804 0.66 0.71443
Target:  5'- gGCG--GCGCCgCCGcGGcgGCGacGGGCUc -3'
miRNA:   3'- gCGCuuUGCGG-GGC-CCuaCGU--CCCGG- -5'
5593 5' -60.4 NC_001806.1 + 102168 0.66 0.71443
Target:  5'- uCGCGAGGaGCCgCuGGAUaacgccCAGGGCCg -3'
miRNA:   3'- -GCGCUUUgCGGgGcCCUAc-----GUCCCGG- -5'
5593 5' -60.4 NC_001806.1 + 122917 0.66 0.71443
Target:  5'- uCGUGGAGCGUCCCGacgc-CAGGGaCCa -3'
miRNA:   3'- -GCGCUUUGCGGGGCccuacGUCCC-GG- -5'
5593 5' -60.4 NC_001806.1 + 64866 0.66 0.71443
Target:  5'- cCGC---GCGUCCCGGGccacgGCGGGaucgGCCg -3'
miRNA:   3'- -GCGcuuUGCGGGGCCCua---CGUCC----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.