miRNA display CGI


Results 1 - 20 of 212 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5593 5' -60.4 NC_001806.1 + 27 0.74 0.319419
Target:  5'- gCGCGcGAC-CCCCGGGggGUguguuuuggggGGGGCCc -3'
miRNA:   3'- -GCGCuUUGcGGGGCCCuaCG-----------UCCCGG- -5'
5593 5' -60.4 NC_001806.1 + 370 0.74 0.312449
Target:  5'- gCGCGcgcGCGCCCgCGGGggGCccGGGCUg -3'
miRNA:   3'- -GCGCuu-UGCGGG-GCCCuaCGu-CCCGG- -5'
5593 5' -60.4 NC_001806.1 + 1430 0.7 0.519412
Target:  5'- aGCGAAucccggGCGgCgCCGGcg-GCAGGGCCc -3'
miRNA:   3'- gCGCUU------UGCgG-GGCCcuaCGUCCCGG- -5'
5593 5' -60.4 NC_001806.1 + 1545 0.68 0.596757
Target:  5'- cCGCGGcccGCGCCaCCGGGcc---GGGCCg -3'
miRNA:   3'- -GCGCUu--UGCGG-GGCCCuacguCCCGG- -5'
5593 5' -60.4 NC_001806.1 + 1846 0.66 0.742912
Target:  5'- aGCGGcGGCGCgUCGGGGUaCAGGcGCg -3'
miRNA:   3'- gCGCU-UUGCGgGGCCCUAcGUCC-CGg -5'
5593 5' -60.4 NC_001806.1 + 2505 0.69 0.548047
Target:  5'- cCGCac-GCGgCCUGGGcgGCGGGGgCg -3'
miRNA:   3'- -GCGcuuUGCgGGGCCCuaCGUCCCgG- -5'
5593 5' -60.4 NC_001806.1 + 2671 0.66 0.742912
Target:  5'- cCGCG-GGCGCCgCCGugugGCuGGGCCc -3'
miRNA:   3'- -GCGCuUUGCGG-GGCccuaCGuCCCGG- -5'
5593 5' -60.4 NC_001806.1 + 2711 0.69 0.577158
Target:  5'- cCGCcAGcCGCCCagGGGGU-CGGGGCCc -3'
miRNA:   3'- -GCGcUUuGCGGGg-CCCUAcGUCCCGG- -5'
5593 5' -60.4 NC_001806.1 + 2750 0.73 0.371444
Target:  5'- gCGCGAcACGgCCaCGGGgcGCGggcGGGCCu -3'
miRNA:   3'- -GCGCUuUGCgGG-GCCCuaCGU---CCCGG- -5'
5593 5' -60.4 NC_001806.1 + 2795 0.72 0.411987
Target:  5'- -cCGggGCGCCgCGGGcuggGCGGGGgCg -3'
miRNA:   3'- gcGCuuUGCGGgGCCCua--CGUCCCgG- -5'
5593 5' -60.4 NC_001806.1 + 2924 0.78 0.165996
Target:  5'- uCGCGGGccgcCGCCuCCGGGcgGCcGGGCCg -3'
miRNA:   3'- -GCGCUUu---GCGG-GGCCCuaCGuCCCGG- -5'
5593 5' -60.4 NC_001806.1 + 2968 0.73 0.348458
Target:  5'- uGCGcuuGCGCCCCucccgcggcgcgGGGAggcgGCGGcGGCCg -3'
miRNA:   3'- gCGCuu-UGCGGGG------------CCCUa---CGUC-CCGG- -5'
5593 5' -60.4 NC_001806.1 + 3105 0.71 0.428095
Target:  5'- cCGCGGAGCucggcaggcgcggGUCCCGcGGcagcGCGGGGCCc -3'
miRNA:   3'- -GCGCUUUG-------------CGGGGC-CCua--CGUCCCGG- -5'
5593 5' -60.4 NC_001806.1 + 3288 0.73 0.356006
Target:  5'- gGCGggGCGCgUCGGcGUGCGGcGGCg -3'
miRNA:   3'- gCGCuuUGCGgGGCCcUACGUC-CCGg -5'
5593 5' -60.4 NC_001806.1 + 3322 0.71 0.432395
Target:  5'- aGCGggGCccgcgggucccuccgGCCgCGGGggGCuggcGGGCCg -3'
miRNA:   3'- gCGCuuUG---------------CGGgGCCCuaCGu---CCCGG- -5'
5593 5' -60.4 NC_001806.1 + 3559 0.67 0.68536
Target:  5'- gGCGGAcagcCGCCCCaGGGcgGCGaggauccccgcGGcGCCg -3'
miRNA:   3'- gCGCUUu---GCGGGG-CCCuaCGU-----------CC-CGG- -5'
5593 5' -60.4 NC_001806.1 + 3947 0.66 0.760545
Target:  5'- aGCGccACGuCCCCGGGGaccacgcGCGGGuucuggaGCCa -3'
miRNA:   3'- gCGCuuUGC-GGGGCCCUa------CGUCC-------CGG- -5'
5593 5' -60.4 NC_001806.1 + 4171 0.73 0.341025
Target:  5'- aGCacc-CGCCCCGGGG-GCGgGGGCCc -3'
miRNA:   3'- gCGcuuuGCGGGGCCCUaCGU-CCCGG- -5'
5593 5' -60.4 NC_001806.1 + 4301 0.69 0.548047
Target:  5'- cCGUGAAGCGgCCCGuGGcgucGCGGccGGCCa -3'
miRNA:   3'- -GCGCUUUGCgGGGC-CCua--CGUC--CCGG- -5'
5593 5' -60.4 NC_001806.1 + 4376 0.66 0.733497
Target:  5'- cCGCGggGguccucgccgcCGCCCgGGGcuuggGCGcGGCCu -3'
miRNA:   3'- -GCGCuuU-----------GCGGGgCCCua---CGUcCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.